Variant report

Variant	rs11601934
Chromosome Location	chr11:47454724-47454725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47446158..47448061-chr11:47454722..47456544,3	MCF-7	breast:
2	chr11:47453415..47456321-chr11:47460580..47462674,2	K562	blood:

Variant related genes	Relation type
ENSG00000252327	Chromatin interaction
ENSG00000165916	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11537751	0.91[AMR][1000 genomes]
rs11601200	0.91[AMR][1000 genomes]
rs11602333	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11602837	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11603587	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11603911	0.91[AMR][1000 genomes]
rs11604233	0.83[AMR][1000 genomes]
rs11605061	0.91[AMR][1000 genomes]
rs11607518	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11607855	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34603363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36016346	0.91[AMR][1000 genomes]
rs7945021	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9666433	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv825871	chr11:47376020-47457537	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
6	nsv975328	chr11:47446815-47471052	Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47448600-47459600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:47448600-47488400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:47448800-47454800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:47449000-47454800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:47449000-47454800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:47449000-47454800	Weak transcription	HSMM	muscle
7	chr11:47449000-47457200	Weak transcription	Right Atrium	heart
8	chr11:47449000-47459200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:47449000-47459400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:47449800-47454800	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:47449800-47454800	Weak transcription	HSMMtube	muscle
12	chr11:47452400-47455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:47453400-47458800	Enhancers	HepG2	liver
14	chr11:47453400-47469200	Weak transcription	Psoas Muscle	Psoas
15	chr11:47453400-47480000	Weak transcription	Thymus	Thymus
16	chr11:47453600-47454800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:47453600-47459000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:47454000-47455800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:47454600-47455200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:47454600-47456600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:47454600-47457800	Enhancers	Liver	Liver

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