Variant report

Variant	rs11603194
Chromosome Location	chr11:56979467-56979468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56950383..56952572-chr11:56977333..56980182,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10792077	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11603531	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11604352	0.87[ASN][1000 genomes]
rs11820215	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1893937	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2077190	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3017577	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4442567	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4939113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs514354	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs567766	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs609763	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs622932	0.95[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs664437	0.86[CHB][hapmap]
rs948851	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56973600-56980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:56974000-56980400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:56974000-56981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:56975200-56981000	Weak transcription	Right Atrium	heart
5	chr11:56977000-56983000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:56977400-56981200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:56977400-56981200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:56978000-56980000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:56978000-56980600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:56978600-56979600	Weak transcription	Fetal Brain Male	brain
11	chr11:56978600-56979800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:56978600-56979800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:56978600-56979800	Weak transcription	Brain Germinal Matrix	brain
14	chr11:56978600-56980600	Weak transcription	Lung	lung
15	chr11:56978600-56980600	Weak transcription	Right Ventricle	heart
16	chr11:56978600-56980800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:56978600-56980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:56978600-56980800	Weak transcription	Placenta	Placenta
19	chr11:56978800-56979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:56978800-56979800	Weak transcription	Fetal Brain Female	brain
21	chr11:56978800-56980200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:56978800-56980200	Weak transcription	Fetal Stomach	stomach
23	chr11:56978800-56980400	Weak transcription	Adipose Nuclei	Adipose
24	chr11:56978800-56980400	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:56978800-56980600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:56978800-56980600	Weak transcription	HSMMtube	muscle
27	chr11:56978800-56980800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:56978800-56981000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:56978800-56981000	Weak transcription	Left Ventricle	heart
30	chr11:56978800-56981200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr11:56979000-56980000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:56979000-56980400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:56979000-56980400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:56979000-56980800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:56979000-56980800	Weak transcription	HSMM	muscle
36	chr11:56979000-56984400	Weak transcription	Spleen	Spleen
37	chr11:56979200-56979600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:56979200-56979600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:56979200-56979800	Weak transcription	Fetal Lung	lung
40	chr11:56979200-56980600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:56979200-56981000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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