Variant report

Variant	rs1160365
Chromosome Location	chr20:24105610-24105611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs34016617	0.87[EUR][1000 genomes]
rs34096340	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34097439	0.87[EUR][1000 genomes]
rs34123386	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35671594	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35675087	0.87[EUR][1000 genomes]
rs6036634	0.81[EUR][1000 genomes]
rs6036639	0.87[EUR][1000 genomes]
rs6036641	0.87[EUR][1000 genomes]
rs6036647	0.87[EUR][1000 genomes]
rs6049376	0.84[EUR][1000 genomes]
rs6049384	0.87[EUR][1000 genomes]
rs6049387	0.87[EUR][1000 genomes]
rs6049388	0.87[EUR][1000 genomes]
rs6049395	0.87[EUR][1000 genomes]
rs6132697	0.87[EUR][1000 genomes]
rs6132698	0.87[EUR][1000 genomes]
rs6132699	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6132702	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6138198	0.84[EUR][1000 genomes]
rs6138199	0.87[EUR][1000 genomes]
rs6138206	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6138211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6138213	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62193667	0.87[EUR][1000 genomes]
rs74173629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24104200-24109600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24104400-24106000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:24104600-24111600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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