Variant report

Variant	rs11603698
Chromosome Location	chr11:71009818-71009819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70992890..70998671-chr11:71006581..71012132,9	MCF-7	breast:
2	chr11:70993749..70996516-chr11:71005355..71010355,6	MCF-7	breast:
3	chr11:70963067..70966325-chr11:71009169..71011676,3	MCF-7	breast:
4	chr11:70961841..70965105-chr11:71007270..71010142,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11604196	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372108	1.00[CEU][hapmap]
rs17348351	0.85[JPT][hapmap]
rs2919724	1.00[CEU][hapmap]
rs2919740	1.00[CEU][hapmap]
rs2919742	1.00[CEU][hapmap]
rs3133512	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs35853657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57565284	0.81[EUR][1000 genomes]
rs59352428	0.81[EUR][1000 genomes]
rs60028995	0.81[EUR][1000 genomes]
rs751211	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998600-71010600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
3	chr11:71007400-71014200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:71008400-71010200	Enhancers	Osteobl	bone
5	chr11:71008400-71012600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:71009000-71010600	Enhancers	Placenta	Placenta
7	chr11:71009200-71010000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:71009200-71010000	Enhancers	HSMMtube	muscle
9	chr11:71009200-71010000	Enhancers	NHDF-Ad	bronchial
10	chr11:71009200-71011000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:71009200-71011200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:71009200-71011200	Enhancers	Esophagus	oesophagus
13	chr11:71009200-71011400	Enhancers	NHLF	lung
14	chr11:71009200-71011600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:71009200-71011600	Enhancers	HMEC	breast
16	chr11:71009200-71011600	Enhancers	HSMM	muscle
17	chr11:71009200-71011800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr11:71009200-71012000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:71009200-71012000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:71009200-71012400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:71009200-71013000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:71009400-71010000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:71009400-71010000	Enhancers	A549	lung
24	chr11:71009400-71010800	Enhancers	NH-A	brain
25	chr11:71009600-71010000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:71009600-71011200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:71009600-71011200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:71009600-71011400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:71009600-71011600	Enhancers	NHEK	skin
30	chr11:71009600-71011800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:71009800-71011000	Flanking Active TSS	Hela-S3	cervix

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