Variant report

Variant	rs11604196
Chromosome Location	chr11:71012776-71012777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70995195..70997597-chr11:71010431..71012982,2	MCF-7	breast:
2	chr11:70977277..70979953-chr11:71011556..71013433,2	MCF-7	breast:
3	chr11:71012038..71014623-chr11:71075700..71077246,2	K562	blood:
4	chr11:70244192..70246271-chr11:71010187..71013175,2	MCF-7	breast:
5	chr11:71010796..71013178-chr11:71016688..71018744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085733	Chromatin interaction
ENSG00000246889	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11603698	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17348351	0.85[JPT][hapmap]
rs3133512	0.85[JPT][hapmap]
rs35853657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57565284	0.81[EUR][1000 genomes]
rs59352428	0.81[EUR][1000 genomes]
rs60028995	0.81[EUR][1000 genomes]
rs751211	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
2	chr11:71007400-71014200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:71009200-71013000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:71010400-71014000	Enhancers	NHDF-Ad	bronchial
5	chr11:71011000-71014200	Enhancers	Hela-S3	cervix
6	chr11:71011200-71012800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:71011400-71012800	Weak transcription	NHLF	lung
8	chr11:71011600-71013000	Weak transcription	HSMM	muscle
9	chr11:71011800-71012800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:71011800-71013000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:71011800-71013000	Weak transcription	HSMMtube	muscle
12	chr11:71012000-71012800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:71012000-71012800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:71012000-71013000	Weak transcription	Osteobl	bone
15	chr11:71012000-71013200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:71012000-71013200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:71012400-71012800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:71012400-71013000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:71012600-71012800	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr11:71012600-71013200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:71012600-71013200	Bivalent Enhancer	Placenta	Placenta
22	chr11:71012600-71013400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:71012600-71013600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:71012600-71014000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:71012600-71014000	Enhancers	A549	lung

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