Variant report

Variant	rs11604561
Chromosome Location	chr11:17118687-17118688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17118352..17120419-chr17:57832537..57835209,2	MCF-7	breast:
2	chr11:17116807..17119779-chr11:17122557..17124694,3	MCF-7	breast:
3	chr11:17099287..17100924-chr11:17118090..17119960,2	MCF-7	breast:
4	chr11:17097195..17099723-chr11:17118234..17121858,4	K562	blood:
5	chr11:17096747..17098267-chr11:17118668..17120477,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201403	Chromatin interaction
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11603461	1.00[ASN][1000 genomes]
rs11603765	1.00[CHB][hapmap]
rs11604470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605779	1.00[ASN][1000 genomes]
rs11607974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap]
rs11827341	1.00[ASN][1000 genomes]
rs12417522	1.00[ASN][1000 genomes]
rs12418260	1.00[ASN][1000 genomes]
rs1544609	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924899	1.00[CHB][hapmap]
rs16933823	1.00[CHB][hapmap]
rs16933827	1.00[CHB][hapmap]
rs17647408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1979602	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2040859	1.00[CHB][hapmap]
rs35297605	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55763300	1.00[ASN][1000 genomes]
rs55928651	1.00[ASN][1000 genomes]
rs56254605	1.00[ASN][1000 genomes]
rs59007596	0.86[ASN][1000 genomes]
rs59075718	1.00[ASN][1000 genomes]
rs61762011	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879669	1.00[ASN][1000 genomes]
rs61879670	1.00[ASN][1000 genomes]
rs61879673	1.00[ASN][1000 genomes]
rs61879686	1.00[ASN][1000 genomes]
rs61879688	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61879698	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879699	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879703	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879714	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879715	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879721	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879731	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881312	1.00[ASN][1000 genomes]
rs72869096	1.00[ASN][1000 genomes]
rs72870840	1.00[ASN][1000 genomes]
rs7481457	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17119200	Weak transcription	Esophagus	oesophagus
2	chr11:17100400-17119200	Weak transcription	Pancreas	Pancrea
3	chr11:17100400-17119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
5	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
6	chr11:17100800-17119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:17108200-17141400	Strong transcription	Liver	Liver
13	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:17108800-17126800	Strong transcription	Osteobl	bone
16	chr11:17109000-17121600	Strong transcription	Adipose Nuclei	Adipose
17	chr11:17109000-17121800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:17109600-17127600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:17109800-17121600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:17110000-17121600	Strong transcription	Fetal Muscle Leg	muscle
27	chr11:17110000-17122200	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr11:17110000-17128200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:17110000-17128400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:17110200-17132800	Strong transcription	Fetal Intestine Large	intestine
31	chr11:17110200-17136400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr11:17110600-17119000	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr11:17111000-17125400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:17111400-17119800	Weak transcription	Stomach Mucosa	stomach
35	chr11:17111600-17119800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:17111600-17119800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:17111600-17124400	Strong transcription	Fetal Intestine Small	intestine
38	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:17112400-17120000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:17112800-17119200	Weak transcription	Gastric	stomach
42	chr11:17112800-17119800	Weak transcription	Aorta	Aorta
43	chr11:17112800-17119800	Weak transcription	Right Ventricle	heart
44	chr11:17113200-17119600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:17113200-17125600	Weak transcription	Small Intestine	intestine
46	chr11:17113400-17119800	Weak transcription	Brain Angular Gyrus	brain
47	chr11:17113400-17120000	Weak transcription	Psoas Muscle	Psoas
48	chr11:17113600-17119600	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:17113600-17119800	Weak transcription	Thymus	Thymus
50	chr11:17113600-17120000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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