Variant report

Variant	rs11605718
Chromosome Location	chr11:17164193-17164194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11024180	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11600230	1.00[ASN][1000 genomes]
rs11603765	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826970	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12419179	1.00[ASN][1000 genomes]
rs1471980	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924899	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16933823	0.94[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933827	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933873	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967077	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974527	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040859	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28845191	1.00[ASN][1000 genomes]
rs35493302	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726107	1.00[ASN][1000 genomes]
rs59545597	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60698184	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879689	0.84[ASN][1000 genomes]
rs61879695	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879701	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478986	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
8	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
11	chr11:17125400-17172200	Weak transcription	Fetal Brain Male	brain
12	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
14	chr11:17130200-17174600	Weak transcription	Spleen	Spleen
15	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
16	chr11:17132000-17167800	Weak transcription	Right Ventricle	heart
17	chr11:17139000-17171200	Weak transcription	Fetal Brain Female	brain
18	chr11:17140000-17183400	Weak transcription	Small Intestine	intestine
19	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
20	chr11:17144600-17166600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:17150800-17165800	Weak transcription	HMEC	breast
22	chr11:17150800-17172000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:17150800-17186000	Weak transcription	NHLF	lung
24	chr11:17151000-17165400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:17151000-17173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:17154600-17166600	Weak transcription	Ovary	ovary
27	chr11:17155000-17166600	Weak transcription	Fetal Kidney	kidney
28	chr11:17156400-17186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:17156400-17186600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:17156600-17165800	Weak transcription	Brain Anterior Caudate	brain
31	chr11:17156600-17165800	Weak transcription	GM12878-XiMat	blood
32	chr11:17156600-17166000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:17156600-17166200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:17156600-17166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:17156600-17166800	Weak transcription	Thymus	Thymus
36	chr11:17156600-17167200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:17156600-17168000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:17156600-17172600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:17156600-17172800	Weak transcription	Brain Angular Gyrus	brain
40	chr11:17156600-17175400	Weak transcription	Esophagus	oesophagus
41	chr11:17156600-17180800	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:17156600-17182400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:17156600-17183600	Weak transcription	Lung	lung
44	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
45	chr11:17156800-17166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:17156800-17172200	Weak transcription	Brain Hippocampus Middle	brain
47	chr11:17156800-17181000	Weak transcription	Brain Germinal Matrix	brain
48	chr11:17157000-17166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:17157000-17175400	Weak transcription	K562	blood
50	chr11:17157200-17167200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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