Variant report

Variant	rs1160574
Chromosome Location	chr1:211085410-211085411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211084542..211086071-chr1:211091285..211093139,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10158086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11119634	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11119647	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11119659	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11119663	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1160575	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117040	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12118119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12122248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12122974	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12124842	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12126553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12126937	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12128894	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12131213	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12131362	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12133961	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12133981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12136201	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12138903	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12139813	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12139930	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12140731	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12142251	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12143882	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12144937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12145265	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12564720	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12566441	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12566456	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1501552	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17017105	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4146993	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61577575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72468065	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9645356	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv549124	chr1:211069694-211088474	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211080400-211085600	Enhancers	Liver	Liver
2	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
3	chr1:211083000-211089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
5	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain
7	chr1:211083200-211088000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:211083800-211089400	Weak transcription	HSMMtube	muscle
9	chr1:211084600-211089400	Weak transcription	HSMM	muscle
10	chr1:211085200-211085600	Enhancers	Brain Cingulate Gyrus	brain
11	chr1:211085200-211085800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:211085400-211089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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