Variant report

Variant	rs11606862
Chromosome Location	chr11:57012742-57012743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57011184..57013387-chr11:57014609..57016452,2	K562	blood:
2	chr11:56894402..56895909-chr11:57012164..57014326,2	K562	blood:
3	chr11:56992366..56994767-chr11:57010638..57012947,2	K562	blood:
4	chr11:56923234..56925283-chr11:57012223..57015017,2	K562	blood:
5	chr11:56888220..56889882-chr11:57010746..57012751,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10896598	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10896604	0.88[CEU][hapmap];0.82[MEX][hapmap]
rs10896608	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs11228973	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11228991	0.82[EUR][1000 genomes]
rs11228997	0.88[CEU][hapmap]
rs11602266	0.80[AMR][1000 genomes]
rs11603691	0.80[AMR][1000 genomes]
rs12364724	0.83[AMR][1000 genomes]
rs2155232	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2155233	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs518272	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61888886	0.80[AMR][1000 genomes]
rs668408	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7111339	0.88[CEU][hapmap]
rs7129491	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs73470506	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57005200-57016400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57008800-57016200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:57009600-57012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:57009600-57016600	Weak transcription	Liver	Liver
5	chr11:57009800-57016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:57010000-57012800	Weak transcription	Gastric	stomach
7	chr11:57010000-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:57011000-57015000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:57012000-57013200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr11:57012000-57013200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:57012000-57013400	Enhancers	Spleen	Spleen
12	chr11:57012200-57013000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:57012200-57013000	Enhancers	Right Atrium	heart
14	chr11:57012200-57013200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:57012200-57013200	Enhancers	Adipose Nuclei	Adipose
16	chr11:57012200-57013200	Enhancers	Left Ventricle	heart
17	chr11:57012200-57013200	Enhancers	Lung	lung
18	chr11:57012200-57013200	Enhancers	HUVEC	blood vessel
19	chr11:57012400-57012800	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:57012400-57012800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:57012400-57013000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
22	chr11:57012400-57013000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:57012400-57013000	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:57012400-57013000	Enhancers	Right Ventricle	heart
25	chr11:57012400-57013200	Enhancers	Fetal Muscle Leg	muscle
26	chr11:57012400-57013200	Enhancers	Placenta	Placenta
27	chr11:57012400-57016400	Weak transcription	K562	blood
28	chr11:57012600-57013000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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