Variant report

Variant	rs11606992
Chromosome Location	chr11:46931941-46931942
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46930367..46932130-chr11:46932289..46934119,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10769225	0.81[ASN][1000 genomes]
rs10838624	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10838627	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10838628	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10838635	0.83[ASN][1000 genomes]
rs11038994	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11038999	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11039002	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11039017	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11039018	0.83[EUR][1000 genomes]
rs11039024	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11039028	0.81[ASN][1000 genomes]
rs11039033	0.82[ASN][1000 genomes]
rs11039035	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11600292	0.83[ASN][1000 genomes]
rs11602250	0.82[ASN][1000 genomes]
rs11608083	0.82[ASN][1000 genomes]
rs12807111	0.81[ASN][1000 genomes]
rs17790204	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1809293	0.82[EUR][1000 genomes]
rs2290883	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2306028	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2306033	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2306036	0.94[EUR][1000 genomes]
rs2306037	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2867219	0.86[EUR][1000 genomes]
rs34340483	0.83[ASN][1000 genomes]
rs4469848	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4494268	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4581406	0.83[ASN][1000 genomes]
rs4752815	0.81[ASN][1000 genomes]
rs4752816	0.81[ASN][1000 genomes]
rs4752936	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4752940	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4752941	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4752946	0.84[EUR][1000 genomes]
rs4752947	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58389391	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60258676	0.84[EUR][1000 genomes]
rs6485715	0.81[ASN][1000 genomes]
rs6485716	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7929688	0.81[ASN][1000 genomes]
rs7938169	0.81[ASN][1000 genomes]
rs7939786	0.81[ASN][1000 genomes]
rs7940441	0.90[ASN][1000 genomes]
rs7945558	0.83[ASN][1000 genomes]
rs7946739	0.83[ASN][1000 genomes]
rs898604	0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11606992	DDB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
2	chr11:46917800-46934000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:46917800-46934000	Weak transcription	NHLF	lung
4	chr11:46918800-46934000	Weak transcription	Colonic Mucosa	Colon
5	chr11:46921600-46933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:46921600-46933800	Weak transcription	NHEK	skin
7	chr11:46921600-46934000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:46921600-46934200	Weak transcription	Esophagus	oesophagus
9	chr11:46921600-46936000	Weak transcription	Pancreas	Pancrea
10	chr11:46921600-46936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:46921800-46934000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:46921800-46938400	Weak transcription	Gastric	stomach
13	chr11:46922200-46934000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:46922200-46934000	Weak transcription	Fetal Intestine Small	intestine
15	chr11:46923000-46933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:46926000-46932000	Weak transcription	Psoas Muscle	Psoas
17	chr11:46926000-46934000	Weak transcription	Fetal Brain Male	brain
18	chr11:46926200-46932800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:46926400-46934000	Weak transcription	Right Atrium	heart
20	chr11:46926400-46934000	Weak transcription	Right Ventricle	heart
21	chr11:46927600-46932200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:46927800-46933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:46927800-46933600	Weak transcription	Spleen	Spleen
24	chr11:46928400-46934000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:46928600-46933200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:46928600-46933800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:46928600-46933800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:46928600-46933800	Weak transcription	HSMMtube	muscle
29	chr11:46928600-46934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:46928600-46934000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:46928600-46934000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:46928600-46934200	Weak transcription	Stomach Mucosa	stomach
33	chr11:46928600-46937200	Weak transcription	HepG2	liver
34	chr11:46928800-46933000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:46928800-46933600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:46928800-46933600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:46928800-46933800	Weak transcription	Brain Germinal Matrix	brain
38	chr11:46928800-46933800	Weak transcription	Fetal Brain Female	brain
39	chr11:46928800-46933800	Weak transcription	Fetal Stomach	stomach
40	chr11:46928800-46933800	Weak transcription	NH-A	brain
41	chr11:46928800-46934000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:46928800-46934000	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:46928800-46934000	Weak transcription	Left Ventricle	heart
44	chr11:46929000-46933600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:46929000-46934000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:46929000-46934200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:46929200-46933800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:46929200-46933800	Weak transcription	Fetal Lung	lung
49	chr11:46929400-46933400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:46929400-46933600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links