Variant report

Variant	rs11607682
Chromosome Location	chr11:10116204-10116205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10115225..10117024-chr11:10118634..10120787,3	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10743129	0.81[EUR][1000 genomes]
rs10770103	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840337	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840338	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840344	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840359	0.91[EUR][1000 genomes]
rs10840375	0.84[EUR][1000 genomes]
rs11042571	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042578	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042579	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042580	0.81[EUR][1000 genomes]
rs11042593	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042595	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042601	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042609	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042615	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042618	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042623	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042627	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042632	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11042641	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11600251	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11600489	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11603440	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606561	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11607703	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360783	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12362938	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364676	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416695	1.00[ASN][1000 genomes]
rs12417184	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12418212	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418619	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419923	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420122	0.83[EUR][1000 genomes]
rs12420734	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12420950	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421096	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12421179	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421200	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421931	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372807	0.90[EUR][1000 genomes]
rs1372808	0.82[EUR][1000 genomes]
rs1442737	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17271847	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17356792	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359113	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1822291	0.83[EUR][1000 genomes]
rs1867135	0.84[EUR][1000 genomes]
rs2197171	0.82[EUR][1000 genomes]
rs2403292	0.89[EUR][1000 genomes]
rs28731164	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34683105	0.89[EUR][1000 genomes]
rs4271380	0.83[EUR][1000 genomes]
rs4281477	0.89[EUR][1000 genomes]
rs4385889	0.83[EUR][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4478985	0.91[EUR][1000 genomes]
rs4519084	0.83[EUR][1000 genomes]
rs4529876	0.92[EUR][1000 genomes]
rs4643073	0.81[EUR][1000 genomes]
rs4910095	0.89[EUR][1000 genomes]
rs4910098	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788918	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796222	0.83[EUR][1000 genomes]
rs56853694	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61877048	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877049	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878582	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878587	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878622	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889838	1.00[ASN][1000 genomes]
rs7114303	0.91[EUR][1000 genomes]
rs7123453	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123820	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924875	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7928959	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931804	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935774	0.84[EUR][1000 genomes]
rs7935934	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7938491	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7938502	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938647	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938788	0.90[EUR][1000 genomes]
rs7945980	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7946995	0.90[EUR][1000 genomes]
rs7947306	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7948215	0.85[EUR][1000 genomes]
rs7950447	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10109600-10117000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:10110400-10122200	Weak transcription	HSMM	muscle
5	chr11:10112000-10119200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:10112400-10122000	Weak transcription	NHLF	lung
7	chr11:10113200-10119200	Weak transcription	Fetal Brain Male	brain
8	chr11:10113400-10118600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:10113400-10119400	Weak transcription	Fetal Lung	lung
10	chr11:10113800-10118400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:10114000-10118600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:10114400-10118600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:10114800-10120000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:10116200-10116800	Enhancers	Ovary	ovary

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