Variant report

Variant	rs11607817
Chromosome Location	chr11:57037394-57037395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10501367	0.86[GIH][hapmap]
rs10792083	0.96[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs10792085	0.84[CEU][hapmap]
rs10896595	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896597	0.94[ASN][1000 genomes]
rs10896599	0.86[ASN][1000 genomes]
rs10896602	0.84[CEU][hapmap]
rs11228968	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228975	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228976	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228978	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228982	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11228984	0.83[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11228985	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11228988	0.86[EUR][1000 genomes]
rs11544374	0.86[GIH][hapmap]
rs11600878	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11604373	0.82[EUR][1000 genomes]
rs11604560	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604778	0.84[ASN][1000 genomes]
rs11605053	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419065	0.89[ASN][1000 genomes]
rs12421633	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421755	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792781	0.84[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.95[ASN][1000 genomes]
rs12797769	0.96[ASN][1000 genomes]
rs17572970	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17651610	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17652078	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892964	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939489	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1939495	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155230	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155231	0.89[ASN][1000 genomes]
rs2226613	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2276038	0.82[JPT][hapmap]
rs2511026	0.85[ASN][1000 genomes]
rs2511029	0.89[ASN][1000 genomes]
rs2511030	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2846042	0.94[ASN][1000 genomes]
rs2846049	0.83[ASN][1000 genomes]
rs2846050	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2846051	0.87[ASN][1000 genomes]
rs2851722	0.94[ASN][1000 genomes]
rs35610294	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3935068	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4384399	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565915	0.95[ASN][1000 genomes]
rs479949	0.94[ASN][1000 genomes]
rs4938855	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938859	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938861	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4939132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs499318	0.94[ASN][1000 genomes]
rs5012051	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs519277	0.94[ASN][1000 genomes]
rs522656	0.89[ASN][1000 genomes]
rs528101	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58295319	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs590240	0.89[ASN][1000 genomes]
rs599947	0.89[ASN][1000 genomes]
rs625565	0.94[ASN][1000 genomes]
rs652016	0.92[ASN][1000 genomes]
rs654635	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591413	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591415	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591416	0.95[ASN][1000 genomes]
rs6591417	0.95[ASN][1000 genomes]
rs7102963	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119375	0.86[GIH][hapmap]
rs7120644	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128371	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7130252	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921992	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7935236	0.91[ASN][1000 genomes]
rs7943761	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11607817	OR8U1	cis	parietal	SCAN
rs11607817	OR5T1	cis	cerebellum	SCAN
rs11607817	GLYATL2	cis	parietal	SCAN
rs11607817	OR5AN1	cis	parietal	SCAN
rs11607817	OR4C6	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57036600-57037400	Enhancers	Brain Germinal Matrix	brain
2	chr11:57036600-57037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:57036600-57037600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:57036600-57037600	Enhancers	Fetal Kidney	kidney
5	chr11:57036600-57037800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:57036600-57038000	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:57036600-57038600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:57036800-57037400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:57036800-57037400	Enhancers	Liver	Liver
10	chr11:57036800-57037400	Enhancers	Fetal Brain Female	brain
11	chr11:57036800-57037400	Enhancers	Left Ventricle	heart
12	chr11:57036800-57037400	Enhancers	Lung	lung
13	chr11:57036800-57037400	Enhancers	Pancreas	Pancrea
14	chr11:57036800-57037400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr11:57036800-57037600	Enhancers	Fetal Lung	lung
16	chr11:57036800-57037800	Enhancers	Fetal Muscle Leg	muscle
17	chr11:57036800-57038000	Enhancers	Adipose Nuclei	Adipose
18	chr11:57037000-57037400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:57037000-57037400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:57037000-57037400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:57037000-57037400	Enhancers	Fetal Intestine Small	intestine
22	chr11:57037000-57037400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr11:57037000-57037400	Enhancers	Spleen	Spleen
24	chr11:57037000-57037400	Enhancers	NHEK	skin
25	chr11:57037000-57037600	Enhancers	Fetal Stomach	stomach
26	chr11:57037200-57037400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:57037200-57037400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:57037200-57037400	Bivalent Enhancer	HSMMtube	muscle
29	chr11:57037200-57037600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:57037200-57037600	Enhancers	Right Atrium	heart
31	chr11:57037200-57042200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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