Variant report

Variant	rs11607855
Chromosome Location	chr11:47480403-47480404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47475878..47478191-chr11:47478977..47480771,2	K562	blood:
2	chr11:47476020..47478191-chr11:47478977..47481555,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11537751	0.91[AMR][1000 genomes]
rs11600974	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs11601200	0.91[AMR][1000 genomes]
rs11601934	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11602333	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11602837	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11603587	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603911	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs11604233	1.00[AMR][1000 genomes]
rs11605061	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs11607518	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34603363	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36016346	0.91[AMR][1000 genomes]
rs7123576	1.00[MEX][hapmap]
rs7945021	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47448600-47488400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:47457400-47480800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:47457400-47488400	Weak transcription	Gastric	stomach
4	chr11:47459800-47480600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:47459800-47480800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:47461800-47480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:47464000-47481000	Weak transcription	NHEK	skin
8	chr11:47465000-47480800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:47465800-47480800	Weak transcription	Primary T cells from cord blood	blood
10	chr11:47468800-47482200	Weak transcription	HUVEC	blood vessel
11	chr11:47471000-47480800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:47471000-47480800	Weak transcription	Left Ventricle	heart
13	chr11:47471000-47480800	Weak transcription	Pancreas	Pancrea
14	chr11:47471000-47486200	Weak transcription	Right Ventricle	heart
15	chr11:47471200-47482200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:47471200-47488400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:47471400-47480600	Weak transcription	A549	lung
18	chr11:47471400-47480800	Weak transcription	Lung	lung
19	chr11:47471400-47489200	Weak transcription	HepG2	liver
20	chr11:47471600-47480600	Weak transcription	HSMM	muscle
21	chr11:47471600-47480600	Weak transcription	HSMMtube	muscle
22	chr11:47471600-47480800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:47471600-47486000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:47471800-47485600	Weak transcription	Spleen	Spleen
25	chr11:47472000-47485600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:47474000-47485800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:47474600-47480800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:47475000-47480600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:47475200-47482600	Weak transcription	NH-A	brain
30	chr11:47475800-47480800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:47475800-47480800	Weak transcription	NHLF	lung
32	chr11:47475800-47482200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:47475800-47486800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:47476000-47480800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:47476000-47483600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:47476000-47486800	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:47476000-47487400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:47476200-47480800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:47476200-47480800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:47476200-47480800	Weak transcription	Fetal Thymus	thymus
41	chr11:47476200-47481000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:47476200-47482200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:47476200-47482400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:47476200-47485000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:47476200-47485200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:47476200-47485600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:47476200-47486400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:47476200-47486600	Weak transcription	Brain Anterior Caudate	brain
49	chr11:47476200-47488200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:47476400-47481000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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