Variant report
| Variant | rs11608222 |
|---|---|
| Chromosome Location | chr11:17267614-17267615 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11604470 | 0.84[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11605497 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11606773 | 0.84[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11607918 | 0.93[EUR][1000 genomes] |
| rs11607974 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17647408 | 0.98[EUR][1000 genomes] |
| rs1979602 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61762011 | 0.85[EUR][1000 genomes] |
| rs61879714 | 0.85[EUR][1000 genomes] |
| rs61879715 | 0.84[EUR][1000 genomes] |
| rs61879721 | 0.84[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61879731 | 0.85[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61879758 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61881880 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61881884 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61881886 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61881889 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61881916 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72862099 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7342171 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv467711 | chr11:17027555-17320797 | Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 55 gene(s) | inside rSNPs | diseases |
| 2 | nsv553568 | chr11:17027555-17320797 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 55 gene(s) | inside rSNPs | diseases |
| 3 | nsv469762 | chr11:17170690-17320691 | Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 4 | nsv482905 | chr11:17170690-17320691 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:17267000-17278800 | Weak transcription | Primary T cells from cord blood | blood |
