Variant report

Variant	rs11611607
Chromosome Location	chr12:86341676-86341677
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10082857	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779220	1.00[ASN][1000 genomes]
rs10779227	0.92[AFR][1000 genomes]
rs10863094	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863111	1.00[ASN][1000 genomes]
rs10863112	1.00[ASN][1000 genomes]
rs10863113	1.00[ASN][1000 genomes]
rs10863114	1.00[ASN][1000 genomes]
rs10863124	1.00[ASN][1000 genomes]
rs10863129	0.82[AMR][1000 genomes]
rs11117089	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117115	1.00[ASN][1000 genomes]
rs11117118	1.00[ASN][1000 genomes]
rs11117122	1.00[ASN][1000 genomes]
rs11117124	1.00[ASN][1000 genomes]
rs11117129	1.00[ASN][1000 genomes]
rs11513955	0.84[AFR][1000 genomes]
rs11608539	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11615948	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369468	0.83[ASN][1000 genomes]
rs12370270	0.83[ASN][1000 genomes]
rs17354637	1.00[ASN][1000 genomes]
rs1847206	0.92[AFR][1000 genomes]
rs2897186	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35629197	0.91[AFR][1000 genomes]
rs4143239	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4919774	1.00[ASN][1000 genomes]
rs61929393	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929394	1.00[ASN][1000 genomes]
rs61929395	1.00[ASN][1000 genomes]
rs61929399	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61929421	0.83[ASN][1000 genomes]
rs61929424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61930913	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61931120	0.88[AFR][1000 genomes]
rs61931121	0.88[AFR][1000 genomes]
rs6539944	0.88[AFR][1000 genomes]
rs7132262	0.83[ASN][1000 genomes]
rs7135154	0.83[ASN][1000 genomes]
rs7303256	1.00[ASN][1000 genomes]
rs73176252	1.00[ASN][1000 genomes]
rs73177142	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73177167	0.92[ASN][1000 genomes]
rs73177169	0.92[ASN][1000 genomes]
rs73177179	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961367	0.92[AFR][1000 genomes]
rs7966131	1.00[ASN][1000 genomes]
rs7971447	0.92[AFR][1000 genomes]
rs7972773	1.00[ASN][1000 genomes]
rs7973694	1.00[ASN][1000 genomes]
rs7975310	1.00[ASN][1000 genomes]
rs7976573	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651977	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738989	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86339800-86342800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:86340800-86342200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:86341000-86342000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:86341000-86342800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:86341200-86341800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr12:86341200-86342800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:86341400-86341800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:86341400-86341800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:86341400-86342400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:86341400-86342800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:86341600-86342600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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