Variant report

Variant	rs11615948
Chromosome Location	chr12:86350988-86350989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr12:86350974-86351174	HepG2	liver:	n/a	chr12:86351085-86351098

Variant related genes	Relation type
ENSG00000258178	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10082857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779220	1.00[ASN][1000 genomes]
rs10779224	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10863094	0.83[ASN][1000 genomes]
rs10863111	1.00[ASN][1000 genomes]
rs10863112	1.00[ASN][1000 genomes]
rs10863113	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863114	1.00[ASN][1000 genomes]
rs10863124	1.00[ASN][1000 genomes]
rs11117089	0.83[ASN][1000 genomes]
rs11117115	1.00[ASN][1000 genomes]
rs11117118	1.00[ASN][1000 genomes]
rs11117122	1.00[ASN][1000 genomes]
rs11117124	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117129	1.00[ASN][1000 genomes]
rs11117148	0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11117152	0.84[YRI][hapmap]
rs11117154	0.86[GIH][hapmap];0.92[TSI][hapmap]
rs11608539	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11611607	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614214	0.84[YRI][hapmap]
rs12298516	0.86[GIH][hapmap];0.97[TSI][hapmap]
rs12369468	0.83[ASN][1000 genomes]
rs12370270	0.83[ASN][1000 genomes]
rs17354637	1.00[ASN][1000 genomes]
rs2897186	0.83[ASN][1000 genomes]
rs4143239	0.83[ASN][1000 genomes]
rs4919774	1.00[ASN][1000 genomes]
rs61929393	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929394	1.00[ASN][1000 genomes]
rs61929395	1.00[ASN][1000 genomes]
rs61929399	0.83[ASN][1000 genomes]
rs61929421	0.83[ASN][1000 genomes]
rs61929424	0.83[ASN][1000 genomes]
rs61930913	0.83[ASN][1000 genomes]
rs7132262	0.83[ASN][1000 genomes]
rs7135154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7136221	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7302043	0.86[GIH][hapmap];0.92[TSI][hapmap]
rs7303256	1.00[ASN][1000 genomes]
rs7307686	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73176252	1.00[ASN][1000 genomes]
rs73177142	0.83[ASN][1000 genomes]
rs73177167	0.92[ASN][1000 genomes]
rs73177169	0.92[ASN][1000 genomes]
rs73177179	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485853	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7489114	0.86[GIH][hapmap];0.92[TSI][hapmap]
rs7966131	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[ASN][1000 genomes]
rs7972773	1.00[ASN][1000 genomes]
rs7973694	1.00[ASN][1000 genomes]
rs7975310	1.00[ASN][1000 genomes]
rs7976573	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651977	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9706029	0.86[GIH][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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