Variant report

Variant	rs11620858
Chromosome Location	chr14:38779157-38779158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11628617	0.86[ASN][1000 genomes]
rs13353118	0.84[ASN][1000 genomes]
rs67210682	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72645008	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322987	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832773	chr14:38612778-38785003	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530640	chr14:38702117-38927901	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38778400-38779200	Enhancers	HUVEC	blood vessel
2	chr14:38778800-38779400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr14:38778800-38779400	Enhancers	Fetal Muscle Leg	muscle
4	chr14:38778800-38779400	Enhancers	Psoas Muscle	Psoas
5	chr14:38778800-38779400	Enhancers	Right Atrium	heart
6	chr14:38779000-38779400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
7	chr14:38779000-38779400	Enhancers	Spleen	Spleen
8	chr14:38779000-38780400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:38779000-38780400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr14:38779000-38780600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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