Variant report

Variant	rs11620931
Chromosome Location	chr14:32883599-32883600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32730953..32733918-chr14:32882288..32884788,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10149776	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149930	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881908	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17098938	0.87[CEU][hapmap]
rs17098990	0.93[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1957002	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784175	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32876800-32895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:32877400-32886000	Weak transcription	HSMMtube	muscle
3	chr14:32877600-32886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:32880200-32884400	Enhancers	Brain Anterior Caudate	brain
5	chr14:32880200-32884600	Enhancers	Brain Angular Gyrus	brain
6	chr14:32880200-32889000	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:32880600-32884400	Enhancers	Brain Substantia Nigra	brain
8	chr14:32881600-32887000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:32882000-32884400	Enhancers	Colon Smooth Muscle	Colon
10	chr14:32882600-32883600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:32882600-32883800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr14:32882600-32884200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:32882600-32884400	Enhancers	Fetal Heart	heart
14	chr14:32882600-32884600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr14:32882600-32888800	Enhancers	Brain Hippocampus Middle	brain
16	chr14:32882800-32883600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr14:32882800-32883600	Enhancers	Fetal Brain Female	brain
18	chr14:32882800-32884200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr14:32882800-32884600	Enhancers	HUVEC	blood vessel
20	chr14:32883000-32884400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:32883000-32884400	Enhancers	Rectal Smooth Muscle	rectum
22	chr14:32883000-32884400	Enhancers	NHEK	skin
23	chr14:32883200-32883800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:32883200-32883800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:32883200-32884200	Enhancers	Brain Germinal Matrix	brain
26	chr14:32883200-32884200	Enhancers	HMEC	breast
27	chr14:32883200-32884400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:32883200-32884400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr14:32883200-32884400	Enhancers	HSMM	muscle
30	chr14:32883200-32884600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr14:32883200-32884800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:32883400-32883600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr14:32883400-32883800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:32883400-32884000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:32883400-32884400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr14:32883400-32886200	Weak transcription	Psoas Muscle	Psoas
37	chr14:32883400-32886400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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