Variant report

Variant	rs11621145
Chromosome Location	chr14:106172880-106172881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106172429-106173053	Raji	blood:	n/a	n/a
2	POLR2A	chr14:106161457-106176992	GM12892	blood:	n/a	n/a
3	TCF12	chr14:106172842-106173027	GM12878	blood:	n/a	n/a
4	TCF3	chr14:106172046-106173380	GM12878	blood:	n/a	chr14:106172895-106172911
5	USF2	chr14:106172871-106173059	GM12878	blood:	n/a	n/a
6	MTA3	chr14:106171387-106173900	GM12878	blood:	n/a	n/a
7	EP300	chr14:106172826-106172990	GM12878	blood:	n/a	n/a
8	TCF12	chr14:106172799-106173047	GM12878	blood:	n/a	n/a
9	FOXM1	chr14:106171831-106174518	GM12878	blood:	n/a	n/a
10	CTCF	chr14:106172701-106172966	GM19240	blood:	n/a	n/a
11	PML	chr14:106171443-106172952	GM12878	blood:	n/a	chr14:106172294-106172302
12	BCL3	chr14:106171824-106172904	GM12878	blood:	n/a	chr14:106172309-106172318
13	POLR2A	chr14:106171441-106177208	GM12892	blood:	n/a	n/a
14	POU2F2	chr14:106171817-106175885	GM12878	blood:	n/a	chr14:106174671-106174683
15	NFATC1	chr14:106171397-106173311	GM12878	blood:	n/a	n/a
16	POLR2A	chr14:106172466-106172912	GM15510	blood:	n/a	n/a
17	POLR2A	chr14:106161382-106176102	GM12878	blood:	n/a	n/a
18	BATF	chr14:106172782-106173073	GM12878	blood:	n/a	n/a
19	PML	chr14:106171371-106176101	GM12878	blood:	n/a	chr14:106172294-106172302
20	TCF3	chr14:106171977-106173162	GM12878	blood:	n/a	chr14:106172895-106172911
21	POLR2A	chr14:106172434-106173033	GM19193	blood:	n/a	n/a
22	ATF2	chr14:106171842-106172973	GM12878	blood:	n/a	n/a
23	RXRA	chr14:106171766-106173073	GM12878	blood:	n/a	chr14:106172396-106172416 chr14:106172473-106172493 chr14:106172374-106172390
24	EBF1	chr14:106172744-106173059	GM12878	blood:	n/a	n/a
25	POLR2A	chr14:106164734-106176145	GM12878	blood:	n/a	n/a
26	USF1	chr14:106172218-106173105	GM12878	blood:	n/a	n/a
27	POLR2A	chr14:106172240-106173046	GM10847	blood:	n/a	n/a
28	POLR2A	chr14:106172478-106173219	GM12878	blood:	n/a	n/a
29	BCLAF1	chr14:106171419-106173046	GM12878	blood:	n/a	chr14:106172309-106172318
30	RUNX3	chr14:106171834-106173060	GM12878	blood:	n/a	n/a
31	POLR2A	chr14:106161465-106177165	GM12892	blood:	n/a	n/a
32	BCL3	chr14:106171418-106173049	GM12878	blood:	n/a	chr14:106172309-106172318
33	CTCF	chr14:106172853-106172943	GM19238	blood:	n/a	n/a
34	EBF1	chr14:106172011-106173419	GM12878	blood:	n/a	chr14:106172429-106172440
35	POLR2A	chr14:106166599-106176124	GM12878	blood:	n/a	n/a
36	BCL11A	chr14:106171737-106173358	GM12878	blood:	n/a	chr14:106172309-106172318
37	MAX	chr14:106172731-106172908	GM12878	blood:	n/a	n/a
38	BHLHE40	chr14:106172871-106173066	GM12878	blood:	n/a	n/a
39	MTA3	chr14:106171404-106173062	GM12878	blood:	n/a	n/a
40	ATF2	chr14:106171393-106173037	GM12878	blood:	n/a	n/a
41	SP1	chr14:106172703-106173073	GM12878	blood:	n/a	n/a
42	CTCF	chr14:106172857-106172995	GM19239	blood:	n/a	n/a
43	CEBPB	chr14:106171220-106173314	GM12878	blood:	n/a	n/a
44	NFATC1	chr14:106171395-106173205	GM12878	blood:	n/a	n/a
45	EP300	chr14:106171931-106173131	GM12878	blood:	n/a	n/a
46	ELF1	chr14:106172126-106173060	GM12878	blood:	n/a	n/a
47	ELF1	chr14:106171818-106172979	GM12878	blood:	n/a	n/a
48	POLR2A	chr14:106171828-106177267	GM12892	blood:	n/a	n/a
49	POLR2A	chr14:106164703-106176176	GM12878	blood:	n/a	n/a
50	USF1	chr14:106172738-106173089	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000253701	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12433324	0.84[EUR][1000 genomes]
rs1407	0.84[ASN][1000 genomes]
rs71426105	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106166200-106174600	Weak transcription	Spleen	Spleen
2	chr14:106172000-106173400	Enhancers	Placenta	Placenta
3	chr14:106172000-106173600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:106172000-106174400	Enhancers	Primary B cells from cord blood	blood
5	chr14:106172000-106174400	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr14:106172200-106173000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr14:106172200-106173000	Enhancers	Fetal Thymus	thymus
8	chr14:106172200-106175000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:106172400-106173600	Enhancers	GM12878-XiMat	blood
10	chr14:106172600-106173000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:106172600-106173800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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