Variant report
Variant | rs11623262 |
---|---|
Chromosome Location | chr14:70284348-70284349 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000100678 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10130926 | 0.94[EUR][1000 genomes] |
rs10136397 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10136529 | 0.88[ASN][1000 genomes] |
rs10146537 | 0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10148404 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11620808 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11621916 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11622580 | 0.89[EUR][1000 genomes] |
rs11622925 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11624532 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11625731 | 0.89[EUR][1000 genomes] |
rs11625932 | 0.92[EUR][1000 genomes] |
rs11626145 | 0.87[EUR][1000 genomes] |
rs11627012 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11627089 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11628423 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11628546 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11628665 | 0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12431573 | 0.83[ASN][1000 genomes] |
rs13313365 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs13313366 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs13313388 | 0.88[ASN][1000 genomes] |
rs14411 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17328 | 0.83[ASN][1000 genomes] |
rs1953399 | 0.92[EUR][1000 genomes] |
rs28404963 | 0.89[EUR][1000 genomes] |
rs28437671 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs28437822 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs28480224 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2877595 | 0.89[EUR][1000 genomes] |
rs2877598 | 0.86[ASN][1000 genomes] |
rs28785205 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs28847646 | 0.88[EUR][1000 genomes] |
rs3809399 | 0.92[EUR][1000 genomes] |
rs4646285 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs4899311 | 0.90[EUR][1000 genomes] |
rs4899313 | 0.92[EUR][1000 genomes] |
rs4902752 | 0.90[EUR][1000 genomes] |
rs4902753 | 0.90[EUR][1000 genomes] |
rs4902756 | 0.81[ASN][1000 genomes] |
rs4902757 | 0.87[ASN][1000 genomes] |
rs55724465 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs55987626 | 0.88[EUR][1000 genomes] |
rs56074637 | 0.92[EUR][1000 genomes] |
rs56140822 | 0.89[EUR][1000 genomes] |
rs56177148 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs57492222 | 0.92[EUR][1000 genomes] |
rs58582364 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs59066042 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs59172911 | 0.89[EUR][1000 genomes] |
rs61356864 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6573905 | 0.89[EUR][1000 genomes] |
rs6573906 | 0.89[EUR][1000 genomes] |
rs6573909 | 0.86[ASN][1000 genomes] |
rs7153985 | 0.88[EUR][1000 genomes] |
rs7160953 | 0.89[EUR][1000 genomes] |
rs7161476 | 0.89[EUR][1000 genomes] |
rs72725718 | 0.89[EUR][1000 genomes] |
rs72725724 | 0.92[EUR][1000 genomes] |
rs72725740 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72725743 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs72725745 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs72725773 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72725776 | 0.90[EUR][1000 genomes] |
rs72725780 | 0.90[EUR][1000 genomes] |
rs8005609 | 0.89[ASN][1000 genomes] |
rs8010836 | 0.89[EUR][1000 genomes] |
rs8021735 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv456336 | chr14:70081956-70574149 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
2 | nsv565007 | chr14:70081956-70574149 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:70280000-70285200 | Weak transcription | Hela-S3 | cervix |
2 | chr14:70281200-70285200 | Weak transcription | HepG2 | liver |
3 | chr14:70282400-70287800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
4 | chr14:70283600-70286000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
5 | chr14:70284200-70288200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |