Variant report

Variant	rs11624620
Chromosome Location	chr14:32886142-32886143
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11156742	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11627622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12436868	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12879580	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12881908	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12888500	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12895473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17098988	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17098990	0.84[AFR][1000 genomes]
rs1885131	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957002	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1957004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2383300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35534415	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784183	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784184	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3825750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4981154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981961	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981962	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4981965	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61981113	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs941742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs941743	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32876800-32895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:32877600-32886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:32880200-32889000	Enhancers	Brain Cingulate Gyrus	brain
4	chr14:32881600-32887000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:32882600-32888800	Enhancers	Brain Hippocampus Middle	brain
6	chr14:32883400-32886200	Weak transcription	Psoas Muscle	Psoas
7	chr14:32883400-32886400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:32884200-32886600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:32884200-32886600	Weak transcription	HMEC	breast
10	chr14:32884200-32887000	Weak transcription	Brain Germinal Matrix	brain
11	chr14:32884200-32887200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:32884200-32887200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:32884200-32887200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:32884400-32886200	Weak transcription	Fetal Heart	heart
15	chr14:32884400-32886200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:32884400-32886200	Weak transcription	HSMM	muscle
17	chr14:32884400-32886600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:32884400-32886600	Weak transcription	NHEK	skin
19	chr14:32884400-32887200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:32884400-32887200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:32884400-32887200	Weak transcription	Colon Smooth Muscle	Colon
22	chr14:32884600-32886400	Weak transcription	HUVEC	blood vessel
23	chr14:32884600-32886600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:32884800-32888800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:32885400-32886600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:32885400-32886600	Enhancers	Brain Anterior Caudate	brain
27	chr14:32885400-32889600	Enhancers	Brain Substantia Nigra	brain
28	chr14:32885800-32889400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr14:32886000-32886400	Enhancers	Fetal Brain Female	brain
30	chr14:32886000-32887200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr14:32886000-32887200	Enhancers	HSMMtube	muscle
32	chr14:32886000-32887600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr14:32886000-32887800	Enhancers	Fetal Muscle Leg	muscle
34	chr14:32886000-32887800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr14:32886000-32888400	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links