Variant report

Variant	rs11626070
Chromosome Location	chr14:69892724-69892725
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69891176..69893252-chr14:69916771..69918608,2	MCF-7	breast:
2	chr14:69863807..69866662-chr14:69890965..69893248,2	K562	blood:

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1010661	0.82[CEU][hapmap]
rs10130642	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10131686	0.96[AMR][1000 genomes]
rs10132626	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10137655	0.83[YRI][hapmap];0.96[AMR][1000 genomes]
rs10137668	0.95[YRI][hapmap];0.96[AMR][1000 genomes]
rs10142738	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10148090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150434	0.96[AMR][1000 genomes]
rs11620664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622130	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624753	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624756	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11844803	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847666	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12147167	0.96[AMR][1000 genomes]
rs12147983	0.96[AMR][1000 genomes]
rs12147999	0.96[AMR][1000 genomes]
rs12185028	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12385913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764155	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1952255	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2015547	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2061088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28531897	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28616724	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286134	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs45536240	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs55751520	0.96[AMR][1000 genomes]
rs57148905	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57675317	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57941356	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59116152	0.96[AMR][1000 genomes]
rs59181716	0.96[AMR][1000 genomes]
rs60238702	0.96[AMR][1000 genomes]
rs61436917	0.96[AMR][1000 genomes]
rs61564515	0.96[AMR][1000 genomes]
rs7143230	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152301	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7155178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161463	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72722198	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72722199	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72723815	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723847	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72723850	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72723857	0.96[AMR][1000 genomes]
rs74061833	0.93[AMR][1000 genomes]
rs8016334	0.91[ASN][1000 genomes]
rs8016618	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022178	1.00[JPT][hapmap]
rs9630395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69871000-69892800	Weak transcription	Left Ventricle	heart
3	chr14:69871000-69902800	Weak transcription	Psoas Muscle	Psoas
4	chr14:69876200-69892800	Weak transcription	Gastric	stomach
5	chr14:69885600-69899400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:69886400-69908200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:69886800-69892800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:69886800-69893000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:69887400-69913000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:69888400-69895800	Weak transcription	Fetal Kidney	kidney
11	chr14:69889200-69892800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
13	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:69889400-69892800	Weak transcription	Right Ventricle	heart
15	chr14:69889400-69892800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
17	chr14:69889600-69906400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:69889800-69895600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69890000-69895600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
21	chr14:69890200-69894400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:69890200-69894600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:69890200-69894800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:69890200-69894800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:69890200-69894800	Strong transcription	GM12878-XiMat	blood
26	chr14:69890200-69895600	Strong transcription	Dnd41	blood
27	chr14:69890400-69894000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:69890400-69894000	Strong transcription	Thymus	Thymus
29	chr14:69890400-69894400	Strong transcription	Fetal Intestine Large	intestine
30	chr14:69890400-69894600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr14:69890400-69894800	Strong transcription	Fetal Muscle Leg	muscle
32	chr14:69890400-69895800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:69890600-69893000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:69890600-69893600	Strong transcription	Duodenum Mucosa	Duodenum
35	chr14:69890600-69894600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr14:69890600-69894800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:69890600-69895200	Strong transcription	Placenta	Placenta
38	chr14:69890600-69895400	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr14:69890600-69896400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:69890600-69896600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:69890800-69893400	Strong transcription	NHEK	skin
42	chr14:69890800-69893600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:69890800-69893600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:69890800-69893600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr14:69890800-69893600	Strong transcription	Brain Hippocampus Middle	brain
46	chr14:69890800-69893600	Strong transcription	Fetal Lung	lung
47	chr14:69890800-69893600	Strong transcription	HMEC	breast
48	chr14:69890800-69894000	Strong transcription	Brain Angular Gyrus	brain
49	chr14:69890800-69894000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr14:69890800-69894000	Strong transcription	Rectal Mucosa Donor 29	rectum

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