Variant report

Variant	rs11626145
Chromosome Location	chr14:70304053-70304054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10130926	0.81[EUR][1000 genomes]
rs10136397	0.84[EUR][1000 genomes]
rs10146537	0.83[EUR][1000 genomes]
rs10148404	0.84[EUR][1000 genomes]
rs11620808	0.84[EUR][1000 genomes]
rs11621916	0.86[EUR][1000 genomes]
rs11622925	0.86[EUR][1000 genomes]
rs11623262	0.87[EUR][1000 genomes]
rs11624301	0.96[ASN][1000 genomes]
rs11624532	0.86[EUR][1000 genomes]
rs11627012	0.87[EUR][1000 genomes]
rs11627089	0.84[EUR][1000 genomes]
rs11628423	0.87[EUR][1000 genomes]
rs11628546	0.87[EUR][1000 genomes]
rs11628665	0.84[EUR][1000 genomes]
rs11628994	0.86[AMR][1000 genomes]
rs13313365	0.84[EUR][1000 genomes]
rs13313366	0.84[EUR][1000 genomes]
rs14411	0.84[EUR][1000 genomes]
rs2148500	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28437671	0.84[EUR][1000 genomes]
rs28437822	0.82[EUR][1000 genomes]
rs28480224	0.80[EUR][1000 genomes]
rs28785205	0.87[EUR][1000 genomes]
rs4646285	0.86[EUR][1000 genomes]
rs55724465	0.82[EUR][1000 genomes]
rs56176047	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56177148	0.84[EUR][1000 genomes]
rs58582364	0.86[EUR][1000 genomes]
rs59066042	0.84[EUR][1000 genomes]
rs61356864	0.86[EUR][1000 genomes]
rs61408837	0.93[AMR][1000 genomes]
rs72725740	0.82[EUR][1000 genomes]
rs72725743	0.86[EUR][1000 genomes]
rs72725745	0.86[EUR][1000 genomes]
rs72725773	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72725776	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72725780	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72725792	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72725793	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72725794	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72725798	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72725799	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs943273	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70295800-70306400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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