Variant report

Variant	rs11626332
Chromosome Location	chr14:68333819-68333820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68324487..68326340-chr14:68333176..68336067,3	MCF-7	breast:
2	chr14:68314860..68317034-chr14:68333283..68336153,3	MCF-7	breast:
3	chr14:68331430..68334740-chr14:69259249..69262451,3	MCF-7	breast:
4	chr14:68332688..68334540-chr14:68933334..68934849,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10130919	0.85[AMR][1000 genomes]
rs10133239	0.85[AMR][1000 genomes]
rs10135927	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10137614	0.84[AMR][1000 genomes]
rs10137930	0.84[AMR][1000 genomes]
rs10141638	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10146380	0.84[AMR][1000 genomes]
rs10148527	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs1015023	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1040598	1.00[JPT][hapmap]
rs10873208	0.85[AMR][1000 genomes]
rs11158694	1.00[JPT][hapmap]
rs11158697	0.85[AMR][1000 genomes]
rs11158700	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158701	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11621019	1.00[JPT][hapmap]
rs11621258	1.00[JPT][hapmap]
rs11622135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11622521	0.81[AMR][1000 genomes]
rs11622535	0.84[AMR][1000 genomes]
rs11623756	0.84[AMR][1000 genomes]
rs11624166	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11624609	1.00[CHB][hapmap]
rs11626594	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11626769	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs11626778	0.84[AMR][1000 genomes]
rs11627100	0.85[AMR][1000 genomes]
rs11627417	0.85[AMR][1000 genomes]
rs11627565	0.84[AMR][1000 genomes]
rs11844492	0.85[AMR][1000 genomes]
rs11848769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11850946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11852208	0.87[ASN][1000 genomes]
rs12431490	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433710	1.00[JPT][hapmap]
rs12433779	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12434751	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12437276	0.87[ASN][1000 genomes]
rs12437441	1.00[JPT][hapmap]
rs12891164	1.00[JPT][hapmap]
rs12893157	1.00[JPT][hapmap]
rs1543391	1.00[JPT][hapmap]
rs17192558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17192586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17783094	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs17783124	0.84[AMR][1000 genomes]
rs17783160	0.85[AMR][1000 genomes]
rs17783304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1810523	1.00[JPT][hapmap]
rs181561	1.00[JPT][hapmap]
rs181564	1.00[JPT][hapmap]
rs181565	1.00[JPT][hapmap]
rs181566	0.81[AMR][1000 genomes]
rs181570	1.00[JPT][hapmap]
rs181576	1.00[JPT][hapmap]
rs1950767	0.88[EUR][1000 genomes]
rs1950769	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1956345	0.85[AMR][1000 genomes]
rs1956347	0.85[AMR][1000 genomes]
rs1956348	0.85[AMR][1000 genomes]
rs2038565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2235967	1.00[JPT][hapmap]
rs2295106	1.00[JPT][hapmap]
rs2295107	1.00[JPT][hapmap]
rs28373844	0.84[AMR][1000 genomes]
rs28604984	0.84[AMR][1000 genomes]
rs28623567	0.84[AMR][1000 genomes]
rs28649231	0.81[ASN][1000 genomes]
rs28713367	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874132	1.00[JPT][hapmap]
rs2874133	1.00[JPT][hapmap]
rs28855496	0.89[EUR][1000 genomes]
rs34588410	0.87[ASN][1000 genomes]
rs34723132	0.87[ASN][1000 genomes]
rs34759521	0.93[ASN][1000 genomes]
rs35272075	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4143685	1.00[JPT][hapmap]
rs4284565	0.81[AMR][1000 genomes]
rs4902533	0.89[EUR][1000 genomes]
rs55867043	0.87[ASN][1000 genomes]
rs55999745	0.85[AMR][1000 genomes]
rs7142433	0.81[AMR][1000 genomes]
rs7143196	1.00[JPT][hapmap]
rs7143496	1.00[JPT][hapmap]
rs7145044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7149482	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs7150705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151091	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7151495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151917	0.87[ASN][1000 genomes]
rs7154635	0.84[AMR][1000 genomes]
rs7155985	0.87[ASN][1000 genomes]
rs7157288	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7159109	0.84[AMR][1000 genomes]
rs7159184	0.80[EUR][1000 genomes]
rs7159622	1.00[JPT][hapmap]
rs7160115	1.00[CHB][hapmap]
rs72723196	0.82[AMR][1000 genomes]
rs72725103	0.82[AMR][1000 genomes]
rs72725114	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72725127	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725141	0.87[ASN][1000 genomes]
rs72725149	0.87[ASN][1000 genomes]
rs72725151	0.87[ASN][1000 genomes]
rs72725153	0.87[ASN][1000 genomes]
rs72725156	0.87[ASN][1000 genomes]
rs72725157	0.87[ASN][1000 genomes]
rs72725159	0.87[ASN][1000 genomes]
rs72725165	0.87[ASN][1000 genomes]
rs764088	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003431	0.84[AMR][1000 genomes]
rs8009358	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8009455	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8012974	0.82[AMR][1000 genomes]
rs8015128	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8017007	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8017013	0.85[AMR][1000 genomes]
rs8018709	0.84[AMR][1000 genomes]
rs8021404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8022206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs932555	0.84[AMR][1000 genomes]
rs961700	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs986382	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:68318600-68334400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:68319200-68334200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:68320800-68338600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr14:68321000-68334000	Weak transcription	Primary B cells from cord blood	blood
6	chr14:68321200-68334400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:68321400-68334200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:68322600-68334800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:68324000-68335600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:68325000-68334400	Weak transcription	Fetal Intestine Small	intestine
12	chr14:68325600-68334800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:68326000-68334000	Weak transcription	Stomach Mucosa	stomach
14	chr14:68327800-68335800	Weak transcription	NHEK	skin
15	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:68330400-68334000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:68330400-68334200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:68331200-68334400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:68331200-68338400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:68331600-68335000	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:68331800-68335200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:68332400-68334200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:68332400-68334600	Strong transcription	Fetal Thymus	thymus
25	chr14:68332600-68334600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr14:68332800-68334400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:68333200-68334600	ZNF genes & repeats	Dnd41	blood
28	chr14:68333200-68334800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:68333400-68334800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
30	chr14:68333600-68334600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr14:68333800-68334000	ZNF genes & repeats	GM12878-XiMat	blood
32	chr14:68333800-68334400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:68333800-68334600	Strong transcription	Primary T cells from cord blood	blood
34	chr14:68333800-68334800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
35	chr14:68333800-68336600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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