Variant report

Variant	rs11626930
Chromosome Location	chr14:70229408-70229409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70212238..70214689-chr14:70228750..70230871,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10130174	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145643	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623504	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626135	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628140	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11628646	0.94[EUR][1000 genomes]
rs11628755	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629222	0.93[EUR][1000 genomes]
rs12431918	0.96[EUR][1000 genomes]
rs12434311	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12434937	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107282	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28488181	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28595072	0.94[EUR][1000 genomes]
rs2877596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340264	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4341691	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs45527638	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56063215	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154784	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982072	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61982074	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61982101	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982104	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61982105	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982106	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61982107	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7159823	0.93[EUR][1000 genomes]
rs72725721	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725750	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8013586	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014462	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8018389	0.94[EUR][1000 genomes]
rs8019166	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020042	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943276	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943277	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70222400-70233000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:70223200-70232400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:70223400-70232400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:70228000-70231200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:70228000-70232400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:70228000-70233000	Weak transcription	NH-A	brain
7	chr14:70228200-70232400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:70228400-70230200	Enhancers	Primary T cells from cord blood	blood
9	chr14:70228600-70231200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr14:70228600-70233000	Weak transcription	NHEK	skin
11	chr14:70228800-70229600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:70228800-70231800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:70229200-70230600	Weak transcription	HUVEC	blood vessel
14	chr14:70229400-70230400	Enhancers	Stomach Mucosa	stomach
15	chr14:70229400-70232600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:70229400-70232600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links