Variant report

Variant	rs11627821
Chromosome Location	chr14:72270956-72270957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10146983	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205103	0.82[CEU][hapmap]
rs17178702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17178716	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17568464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767971	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1892559	1.00[JPT][hapmap]
rs35028395	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35499119	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3784057	1.00[CHB][hapmap]
rs72732358	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8011886	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8011978	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1047559	chr14:72151736-72282151	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1342	chr14:72260578-72305563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72266200-72273600	Weak transcription	Lung	lung
2	chr14:72269800-72272400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:72270000-72271000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:72270000-72271400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:72270000-72271600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr14:72270000-72271600	Enhancers	HUVEC	blood vessel
7	chr14:72270200-72271000	Enhancers	HMEC	breast
8	chr14:72270200-72271200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:72270200-72271200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:72270200-72271400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:72270200-72271400	Enhancers	A549	lung
12	chr14:72270200-72271600	Enhancers	Osteobl	bone
13	chr14:72270200-72272000	Enhancers	NH-A	brain
14	chr14:72270400-72271400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:72270400-72272000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:72270400-72272000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr14:72270800-72271000	Flanking Active TSS	Hela-S3	cervix
18	chr14:72270800-72271400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:72270800-72271600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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