Variant report

Variant	rs11628646
Chromosome Location	chr14:70241380-70241381
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70240748..70243756-chr14:70261523..70264919,3	MCF-7	breast:
2	chr14:70046299..70047841-chr14:70240558..70242484,2	K562	blood:

Variant related genes	Relation type
ENSG00000100652	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10130174	1.00[CEU][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130926	0.83[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs10134553	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10145643	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11623504	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs11626135	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11626930	0.94[EUR][1000 genomes]
rs11628140	0.90[EUR][1000 genomes]
rs11628755	0.97[EUR][1000 genomes]
rs11629222	0.94[EUR][1000 genomes]
rs12431918	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12434311	0.96[EUR][1000 genomes]
rs12434937	0.94[EUR][1000 genomes]
rs12436240	1.00[CHB][hapmap]
rs17107278	0.88[ASW][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17107282	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2332166	0.84[AFR][1000 genomes]
rs28488181	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28595072	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877596	0.94[EUR][1000 genomes]
rs4340264	0.87[EUR][1000 genomes]
rs4341691	0.83[EUR][1000 genomes]
rs45527638	0.97[EUR][1000 genomes]
rs56063215	0.97[EUR][1000 genomes]
rs56154784	0.94[EUR][1000 genomes]
rs61982074	0.90[EUR][1000 genomes]
rs61982101	0.92[EUR][1000 genomes]
rs61982104	0.94[EUR][1000 genomes]
rs61982105	0.97[EUR][1000 genomes]
rs61982106	0.96[EUR][1000 genomes]
rs61982107	0.93[EUR][1000 genomes]
rs7159823	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs72725721	0.91[EUR][1000 genomes]
rs72725750	0.96[EUR][1000 genomes]
rs8013586	0.97[EUR][1000 genomes]
rs8014019	0.94[AFR][1000 genomes]
rs8014462	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs8018389	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019166	0.97[EUR][1000 genomes]
rs8020042	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes]
rs9323529	0.88[ASW][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs943276	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs943277	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70235400-70248200	Strong transcription	Fetal Muscle Trunk	muscle
2	chr14:70235600-70244600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:70235600-70246200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:70235600-70247000	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:70235800-70241400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:70235800-70244200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:70235800-70244400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr14:70235800-70246200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:70235800-70246400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr14:70235800-70246600	Strong transcription	HSMMtube	muscle
11	chr14:70235800-70246800	Strong transcription	Primary hematopoietic stem cells	blood
12	chr14:70235800-70248800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:70235800-70249200	Strong transcription	HSMM	muscle
14	chr14:70236000-70242000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:70236000-70245400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr14:70236000-70247000	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:70236000-70247600	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:70236000-70248800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:70236400-70242400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:70236400-70246400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:70236400-70248800	Strong transcription	Primary B cells from cord blood	blood
22	chr14:70236600-70241400	Strong transcription	Brain Germinal Matrix	brain
23	chr14:70236600-70241800	Strong transcription	Aorta	Aorta
24	chr14:70236600-70244800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr14:70236600-70246000	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr14:70236600-70247200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:70236600-70248200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:70236600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:70236600-70248200	Strong transcription	HMEC	breast
30	chr14:70236600-70248400	Strong transcription	Fetal Lung	lung
31	chr14:70236600-70249400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:70236800-70241800	Strong transcription	Spleen	Spleen
33	chr14:70236800-70242800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:70236800-70242800	Strong transcription	Fetal Thymus	thymus
35	chr14:70236800-70245400	Strong transcription	NHDF-Ad	bronchial
36	chr14:70236800-70246200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:70236800-70246200	Strong transcription	Fetal Muscle Leg	muscle
38	chr14:70236800-70246400	Strong transcription	Fetal Stomach	stomach
39	chr14:70236800-70246600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:70236800-70247200	Strong transcription	NH-A	brain
41	chr14:70236800-70247800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:70236800-70248000	Weak transcription	Right Atrium	heart
43	chr14:70236800-70248200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:70236800-70248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:70236800-70248600	Strong transcription	Fetal Brain Female	brain
46	chr14:70236800-70248800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr14:70236800-70249000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:70236800-70249000	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr14:70237000-70253200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr14:70237200-70247000	Strong transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links