Variant report

Variant	rs11628709
Chromosome Location	chr14:35173442-35173443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35169772..35172224-chr14:35172922..35177052,4	MCF-7	breast:
2	chr14:35173248..35178951-chr14:35179465..35185421,12	K562	blood:
3	chr14:35173049..35174992-chr14:35202703..35204231,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165410	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1044140	1.00[AFR][1000 genomes]
rs17527243	1.00[AFR][1000 genomes]
rs17592803	1.00[AFR][1000 genomes]
rs2383673	1.00[AFR][1000 genomes]
rs41301471	1.00[AFR][1000 genomes]
rs41309244	1.00[AFR][1000 genomes]
rs45620534	1.00[AFR][1000 genomes]
rs61981239	1.00[AFR][1000 genomes]
rs7145452	1.00[AFR][1000 genomes]
rs7149819	1.00[AFR][1000 genomes]
rs7150746	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35169400-35174000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:35169400-35177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:35169600-35181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:35169800-35179200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:35169800-35180000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:35170000-35176200	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:35170200-35176000	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:35170200-35177000	Weak transcription	Brain Substantia Nigra	brain
9	chr14:35170200-35177400	Weak transcription	Brain Anterior Caudate	brain
10	chr14:35170200-35178000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:35170200-35180000	Weak transcription	HMEC	breast
12	chr14:35170200-35180400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:35170200-35181200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:35170400-35174000	Weak transcription	HSMM	muscle
15	chr14:35170400-35174200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:35170400-35174400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:35170400-35174400	Weak transcription	NHDF-Ad	bronchial
18	chr14:35170400-35178400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:35170400-35178600	Weak transcription	NHLF	lung
20	chr14:35170400-35183200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:35170600-35178400	Weak transcription	NH-A	brain
22	chr14:35170800-35174000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:35170800-35182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:35171400-35174400	Weak transcription	Hela-S3	cervix
25	chr14:35171400-35176800	Weak transcription	A549	lung
26	chr14:35171400-35176800	Weak transcription	HepG2	liver
27	chr14:35171400-35178600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:35171600-35174400	Weak transcription	Osteobl	bone
29	chr14:35171600-35178400	Weak transcription	HUVEC	blood vessel
30	chr14:35172400-35183000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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