Variant report

Variant	rs11629368
Chromosome Location	chr14:65892024-65892025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65880600..65882625-chr14:65890707..65892397,2	MCF-7	breast:
2	chr14:65890670..65892894-chr14:65906484..65908043,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11158594	0.81[AMR][1000 genomes]
rs7147624	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880600-65899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:65880600-65899400	Weak transcription	Small Intestine	intestine
3	chr14:65880800-65896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65880800-65898000	Weak transcription	Gastric	stomach
5	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:65881000-65899400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:65881800-65895000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
11	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
12	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:65886200-65895600	Weak transcription	Primary T cells from cord blood	blood
14	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:65886800-65898000	Weak transcription	Dnd41	blood
16	chr14:65887000-65892600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:65887400-65898400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:65888200-65892800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:65888200-65898800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:65888200-65898800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:65888400-65898800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:65888400-65905400	Weak transcription	Ovary	ovary
23	chr14:65888800-65892200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:65888800-65898800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:65889000-65898800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:65889200-65894000	Weak transcription	Brain Substantia Nigra	brain
28	chr14:65889200-65894400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:65889200-65894600	Weak transcription	Brain Angular Gyrus	brain
30	chr14:65889200-65898000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr14:65889200-65899400	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:65889200-65899400	Weak transcription	NHDF-Ad	bronchial
33	chr14:65889400-65892600	Weak transcription	K562	blood
34	chr14:65889400-65894600	Weak transcription	Brain Hippocampus Middle	brain
35	chr14:65890800-65894600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr14:65891000-65898800	Weak transcription	Stomach Mucosa	stomach
37	chr14:65891000-65899200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:65891200-65900400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:65891600-65894800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:65891600-65894800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:65891600-65904000	Weak transcription	Lung	lung
42	chr14:65891800-65893400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:65891800-65898800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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