Variant report

Variant	rs11629737
Chromosome Location	chr15:39804846-39804847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39802198..39806304-chr15:39871801..39874775,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11070216	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1159994	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1159995	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11639087	0.81[ASN][1000 genomes]
rs12591824	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592357	0.95[ASN][1000 genomes]
rs12594419	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12906549	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13379836	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1351166	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1478606	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1947783	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2199657	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4924365	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4924366	0.83[ASN][1000 genomes]
rs7169338	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs719964	0.96[ASN][1000 genomes]
rs8038823	0.81[ASN][1000 genomes]
rs936532	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39802000-39805200	Enhancers	K562	blood
2	chr15:39802000-39806000	Enhancers	Fetal Muscle Leg	muscle
3	chr15:39802200-39805200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr15:39802800-39805400	Enhancers	Fetal Heart	heart
5	chr15:39803200-39805000	Enhancers	Colon Smooth Muscle	Colon
6	chr15:39803200-39805000	Enhancers	Left Ventricle	heart
7	chr15:39803400-39805000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:39803400-39805000	Enhancers	Adipose Nuclei	Adipose
9	chr15:39803400-39805000	Enhancers	Fetal Lung	lung
10	chr15:39803400-39805200	Enhancers	Colonic Mucosa	Colon
11	chr15:39803400-39805400	Enhancers	Fetal Stomach	stomach
12	chr15:39803600-39805200	Enhancers	Fetal Muscle Trunk	muscle
13	chr15:39804000-39805200	Enhancers	Duodenum Mucosa	Duodenum
14	chr15:39804200-39805000	Enhancers	Stomach Smooth Muscle	stomach
15	chr15:39804200-39805000	Enhancers	HSMM	muscle
16	chr15:39804200-39805000	Enhancers	HSMMtube	muscle
17	chr15:39804200-39805000	Enhancers	NHLF	lung
18	chr15:39804200-39805200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:39804200-39805200	Enhancers	NHDF-Ad	bronchial
20	chr15:39804200-39811000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:39804400-39805000	Enhancers	Osteobl	bone
22	chr15:39804400-39805200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:39804400-39805200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:39804400-39805600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:39804800-39805000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr15:39804800-39805200	Enhancers	Fetal Thymus	thymus
27	chr15:39804800-39805200	Enhancers	Thymus	Thymus

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