Variant report

Variant	rs11630206
Chromosome Location	chr15:78618608-78618609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78617234..78619818-chr15:78622229..78624216,2	MCF-7	breast:
2	chr15:78618188..78620654-chr15:78728966..78731813,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11632415	0.81[EUR][1000 genomes]
rs62007859	0.95[ASN][1000 genomes]
rs62010360	0.95[ASN][1000 genomes]
rs8037145	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78614800-78621800	Weak transcription	Spleen	Spleen
2	chr15:78616000-78621400	Weak transcription	HUVEC	blood vessel
3	chr15:78616200-78619800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr15:78616200-78619800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:78617200-78618800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:78617400-78623600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:78617600-78623800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:78618000-78619200	Weak transcription	Placenta	Placenta
9	chr15:78618000-78619400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:78618000-78623000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:78618000-78623600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:78618200-78619600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:78618200-78619600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:78618200-78622600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:78618200-78622600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:78618200-78623600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:78618200-78623600	Weak transcription	Fetal Intestine Large	intestine
18	chr15:78618200-78623600	Weak transcription	Fetal Intestine Small	intestine
19	chr15:78618200-78633400	Weak transcription	Right Atrium	heart
20	chr15:78618400-78622000	Weak transcription	Hela-S3	cervix
21	chr15:78618600-78619600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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