Variant report

Variant	rs11631131
Chromosome Location	chr15:39742366-39742367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39739352..39742846-chr15:39745277..39748876,4	MCF-7	breast:
2	chr15:39741167..39743297-chr15:39871792..39873904,2	MCF-7	breast:
3	chr15:39739658..39743220-chr15:39872774..39876303,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10520131	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11630143	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11630296	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631290	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631466	0.90[EUR][1000 genomes]
rs11631836	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11634087	0.90[EUR][1000 genomes]
rs11634167	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11634541	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11634743	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635229	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11635586	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11636438	0.90[EUR][1000 genomes]
rs11637421	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969087	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969090	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969092	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16969119	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17702778	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1973175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3960597	0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs3973348	0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs3973349	1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[EUR][1000 genomes]
rs3973365	0.90[EUR][1000 genomes]
rs4603529	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924364	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55848083	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56313937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56329829	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58157051	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58280064	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60266259	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60313653	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60420802	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60664658	0.90[EUR][1000 genomes]
rs61545963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165434	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171799	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73393456	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73393472	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73399395	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74010136	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042191	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878941	0.93[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1036091	chr15:39699841-39750193	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39727200-39746800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:39737200-39742800	Weak transcription	Lung	lung
3	chr15:39737400-39742400	Weak transcription	Fetal Stomach	stomach
4	chr15:39737600-39742400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:39737800-39742600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:39739400-39742400	Enhancers	HepG2	liver
7	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:39740400-39745400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:39740400-39745400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:39740400-39747200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:39740800-39742600	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:39740800-39745400	Weak transcription	GM12878-XiMat	blood
13	chr15:39741000-39742400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:39741000-39742600	Weak transcription	Small Intestine	intestine

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