Variant report

Variant	rs11631423
Chromosome Location	chr15:76608686-76608687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76586485..76588241-chr15:76606261..76609045,2	K562	blood:
2	chr15:76608047..76610382-chr15:76618699..76620905,3	K562	blood:
3	chr15:76585004..76587553-chr15:76607563..76610231,2	MCF-7	breast:
4	chr15:76605907..76608754-chr15:76611748..76613276,2	K562	blood:
5	chr15:76601284..76605220-chr15:76605803..76613495,17	K562	blood:
6	chr15:76605423..76608075-chr15:76608528..76612438,4	MCF-7	breast:
7	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
8	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
9	chr15:76586585..76588473-chr15:76607510..76609209,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2404971	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886787	0.90[YRI][hapmap]
rs4886793	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56074065	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56372945	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57217518	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59467462	0.95[ASN][1000 genomes]
rs60929076	0.85[ASN][1000 genomes]
rs62027051	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027053	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027055	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11631423	SCAPER	cis	cerebellum	SCAN
rs11631423	SH2D7	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76604200-76608800	Weak transcription	Right Atrium	heart
2	chr15:76604200-76609000	Weak transcription	Primary T cells from cord blood	blood
3	chr15:76604200-76613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:76604400-76613600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:76606400-76609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:76606600-76610400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:76606600-76610400	Weak transcription	NHEK	skin
8	chr15:76606600-76611600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:76606600-76612200	Weak transcription	K562	blood
10	chr15:76607800-76619400	Weak transcription	Hela-S3	cervix
11	chr15:76608000-76612000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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