Variant report

Variant	rs11632963
Chromosome Location	chr15:79132644-79132645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79132097..79136188-chr15:79137055..79140077,3	K562	blood:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11072810	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11072811	1.00[EUR][1000 genomes]
rs11072812	0.85[EUR][1000 genomes]
rs11632020	0.83[EUR][1000 genomes]
rs11637783	0.83[EUR][1000 genomes]
rs11852830	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11857877	0.85[EUR][1000 genomes]
rs12232282	0.85[EUR][1000 genomes]
rs12903613	0.92[EUR][1000 genomes]
rs12903668	0.92[EUR][1000 genomes]
rs12908341	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12911870	0.80[EUR][1000 genomes]
rs28580532	0.85[EUR][1000 genomes]
rs34184420	0.82[EUR][1000 genomes]
rs4132786	0.85[EUR][1000 genomes]
rs4344704	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4420501	0.85[EUR][1000 genomes]
rs4438276	0.85[EUR][1000 genomes]
rs4439728	0.85[EUR][1000 genomes]
rs4539564	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4551997	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4567668	0.85[EUR][1000 genomes]
rs62011004	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6495337	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6495339	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6495340	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166405	0.85[ASN][1000 genomes]
rs7169511	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7173743	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7178750	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8024048	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8030937	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8032771	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8032842	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8034804	0.92[EUR][1000 genomes]
rs8035039	0.92[EUR][1000 genomes]
rs8037171	0.85[EUR][1000 genomes]
rs9920324	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79118400-79138400	Weak transcription	Right Atrium	heart
2	chr15:79125200-79133000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:79130400-79132800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:79130800-79133000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:79130800-79135800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:79131000-79133000	Weak transcription	HSMMtube	muscle
7	chr15:79131200-79132800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:79131200-79133000	Weak transcription	Fetal Lung	lung
9	chr15:79131400-79133000	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:79131800-79133000	Enhancers	GM12878-XiMat	blood
11	chr15:79132200-79133400	Weak transcription	Aorta	Aorta
12	chr15:79132200-79134200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:79132400-79133600	Enhancers	Adipose Nuclei	Adipose
14	chr15:79132400-79133600	Enhancers	Placenta	Placenta
15	chr15:79132400-79134600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:79132600-79134000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links