Variant report

Variant	rs11633519
Chromosome Location	chr15:78999552-78999553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11072787	0.85[CEU][hapmap]
rs11072793	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072794	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072799	0.80[ASN][1000 genomes]
rs1114829	0.84[EUR][1000 genomes]
rs11629639	0.89[ASN][1000 genomes]
rs11629824	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11633170	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11634628	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12899940	0.94[CEU][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12907178	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12907511	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12907739	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12908510	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1809412	0.94[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1809414	0.80[ASN][1000 genomes]
rs2869552	0.82[EUR][1000 genomes]
rs3861181	0.84[CEU][hapmap]
rs4887074	0.90[CEU][hapmap]
rs4887078	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4887085	0.81[ASN][1000 genomes]
rs4887091	0.90[CEU][hapmap]
rs62010552	0.81[EUR][1000 genomes]
rs62010554	0.84[EUR][1000 genomes]
rs6495317	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6495318	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7163236	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7170552	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7170563	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7182567	0.89[CEU][hapmap]
rs72625802	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8039600	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8043123	0.89[CEU][hapmap]
rs899997	0.95[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs9888691	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78988600-79001600	Weak transcription	Pancreas	Pancrea
2	chr15:78998000-79001400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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