Variant report

Variant	rs11635063
Chromosome Location	chr15:56167314-56167315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11071229	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1134352	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853453	0.80[EUR][1000 genomes]
rs11858692	0.80[EUR][1000 genomes]
rs12593446	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906680	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12912488	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12912732	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16976653	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17819276	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17819294	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1912404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28444575	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34965600	0.81[ASN][1000 genomes]
rs3759865	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774229	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493825	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493827	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7163864	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7180060	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182280	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56148200-56174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56149000-56177600	Weak transcription	Spleen	Spleen
3	chr15:56152800-56174600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:56153000-56167400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:56153000-56174000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:56153000-56174400	Weak transcription	HSMMtube	muscle
7	chr15:56153000-56174800	Weak transcription	Fetal Intestine Small	intestine
8	chr15:56153000-56176400	Weak transcription	Esophagus	oesophagus
9	chr15:56153600-56178600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:56155400-56174800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:56155400-56175600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:56158200-56176400	Weak transcription	Left Ventricle	heart
13	chr15:56161200-56174400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:56161200-56179800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:56161400-56174400	Weak transcription	NHEK	skin
16	chr15:56161400-56174600	Weak transcription	Primary T cells from cord blood	blood
17	chr15:56161400-56177400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:56161800-56174200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:56163400-56174600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:56163600-56174400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:56165000-56171200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:56165200-56174200	Weak transcription	Liver	Liver
23	chr15:56165200-56174200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:56165600-56169400	Weak transcription	HSMM	muscle
25	chr15:56165600-56171200	Weak transcription	Aorta	Aorta
26	chr15:56165600-56174800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:56166000-56170600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:56166000-56170800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:56166000-56171400	Weak transcription	HUVEC	blood vessel
30	chr15:56166000-56174400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:56166000-56185400	Weak transcription	Hela-S3	cervix
32	chr15:56166600-56167400	Enhancers	A549	lung
33	chr15:56166600-56167800	Enhancers	Psoas Muscle	Psoas

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