Variant report
| Variant | rs11640665 |
|---|---|
| Chromosome Location | chr16:80562748-80562749 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80561442..80564402-chr16:80573429..80575868,3 | MCF-7 | breast: | |
| 2 | chr16:80560059..80562846-chr16:80837762..80839641,2 | MCF-7 | breast: | |
| 3 | chr16:80560152..80563115-chr16:80649804..80651965,3 | MCF-7 | breast: | |
| 4 | chr16:80562214..80563114-chr16:80885641..80886395,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168589 | Chromatin interaction |
| ENSG00000166446 | Chromatin interaction |
| ENSG00000259867 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs13333303 | 0.85[AMR][1000 genomes] |
| rs28546444 | 0.90[EUR][1000 genomes] |
| rs4558433 | 0.84[AFR][1000 genomes] |
| rs4577099 | 0.94[AFR][1000 genomes] |
| rs7190501 | 0.91[AFR][1000 genomes] |
| rs8047198 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8048886 | 0.89[AFR][1000 genomes] |
| rs8059886 | 0.87[AFR][1000 genomes] |
| rs9806915 | 0.94[AFR][1000 genomes] |
| rs9806977 | 0.96[AFR][1000 genomes] |
| rs9928594 | 0.95[AFR][1000 genomes] |
| rs9935535 | 0.91[AFR][1000 genomes] |
| rs9938023 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv907001 | chr16:80405292-80620611 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv833300 | chr16:80475066-80601036 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1060621 | chr16:80532848-80980616 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 4 | nsv542989 | chr16:80532848-80980616 | Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
