Variant report

Variant	rs11663493
Chromosome Location	chr18:30355515-30355516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12373178	0.94[ASN][1000 genomes]
rs12956058	0.86[ASN][1000 genomes]
rs1403750	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2140445	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55737004	0.94[ASN][1000 genomes]
rs715401	0.86[ASN][1000 genomes]
rs7229257	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7234579	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30352600-30356000	Weak transcription	Colon Smooth Muscle	Colon
2	chr18:30354200-30357200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr18:30354400-30357000	Weak transcription	HepG2	liver
4	chr18:30354600-30355600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:30354600-30357600	Weak transcription	Primary B cells from cord blood	blood
6	chr18:30355000-30356200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr18:30355200-30355800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr18:30355200-30356400	Enhancers	HUVEC	blood vessel
9	chr18:30355400-30355600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr18:30355400-30356000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr18:30355400-30356000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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