Variant report

Variant	rs11669918
Chromosome Location	chr19:42414133-42414134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:42400938..42403112-chr19:42412847..42414847,2	MCF-7	breast:
2	chr19:42406489..42409925-chr19:42413611..42416710,4	K562	blood:
3	chr19:42407772..42411584-chr19:42411987..42415149,3	MCF-7	breast:
4	chr19:42386109..42390387-chr19:42411996..42416642,6	K562	blood:
5	chr19:42400409..42404033-chr19:42410840..42416491,6	K562	blood:

Variant related genes	Relation type
ENSG00000076928	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11083643	1.00[LWK][hapmap]
rs11668239	1.00[CEU][hapmap];1.00[LWK][hapmap]
rs11671088	1.00[LWK][hapmap]
rs11672172	1.00[CEU][hapmap]
rs12460885	1.00[LWK][hapmap]
rs12610025	1.00[LWK][hapmap]
rs2303797	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs3745226	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs3745227	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs3760640	1.00[MEX][hapmap]
rs9676263	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv1061878	chr19:42325490-42416056	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv911776	chr19:42343526-42416056	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv911777	chr19:42357455-42521108	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv911778	chr19:42358362-42416056	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	esv1805469	chr19:42367635-42798851	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
8	nsv911780	chr19:42398450-42521108	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv911781	chr19:42398450-42542999	Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42389200-42429200	Weak transcription	Right Atrium	heart
2	chr19:42396800-42415200	Strong transcription	Dnd41	blood
3	chr19:42408000-42414200	Weak transcription	Fetal Kidney	kidney
4	chr19:42408400-42414200	Weak transcription	K562	blood
5	chr19:42409800-42414400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:42409800-42414400	Weak transcription	HSMMtube	muscle
7	chr19:42410000-42414800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr19:42410200-42414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:42410600-42415400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr19:42410800-42415000	Weak transcription	NH-A	brain
11	chr19:42411000-42414400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:42411000-42414400	Weak transcription	NHEK	skin
13	chr19:42411200-42414400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr19:42411200-42414800	Weak transcription	Fetal Lung	lung
15	chr19:42411200-42415000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr19:42411200-42415200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr19:42411200-42415800	Weak transcription	Primary B cells from cord blood	blood
18	chr19:42411400-42414400	Weak transcription	Brain Angular Gyrus	brain
19	chr19:42411400-42414600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr19:42411400-42414800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr19:42411400-42414800	Weak transcription	Small Intestine	intestine
22	chr19:42411400-42415000	Weak transcription	Esophagus	oesophagus
23	chr19:42411400-42415200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr19:42411400-42415600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr19:42411400-42415800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr19:42411400-42416200	Weak transcription	Pancreas	Pancrea
27	chr19:42411600-42414800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr19:42411600-42414800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr19:42411600-42415600	Weak transcription	Left Ventricle	heart
30	chr19:42411600-42415800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr19:42411600-42415800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr19:42411800-42414200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr19:42411800-42414200	Weak transcription	Adipose Nuclei	Adipose
34	chr19:42411800-42414200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr19:42411800-42414400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr19:42411800-42414400	Weak transcription	Liver	Liver
37	chr19:42411800-42414400	Weak transcription	HMEC	breast
38	chr19:42411800-42414800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr19:42411800-42416000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr19:42411800-42416000	Weak transcription	Brain Substantia Nigra	brain
41	chr19:42411800-42416000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr19:42411800-42416000	Weak transcription	GM12878-XiMat	blood
43	chr19:42412000-42414200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr19:42412400-42414200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr19:42412400-42414600	Weak transcription	Right Ventricle	heart
46	chr19:42412400-42414800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr19:42412400-42415000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:42412600-42414400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr19:42412600-42414800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr19:42412600-42415800	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links