Variant report

Variant	rs11670917
Chromosome Location	chr19:37002529-37002530
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11672024	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11673325	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12971760	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12985198	0.85[AMR][1000 genomes]
rs17206393	0.87[AMR][1000 genomes]
rs2385797	0.84[AMR][1000 genomes]
rs2912415	0.81[AMR][1000 genomes]
rs2912423	0.81[AMR][1000 genomes]
rs2912435	0.84[AMR][1000 genomes]
rs2912439	0.81[AMR][1000 genomes]
rs2912441	0.84[AMR][1000 genomes]
rs2945953	0.81[AMR][1000 genomes]
rs2945976	0.82[AMR][1000 genomes]
rs2967443	0.81[AMR][1000 genomes]
rs2967445	0.82[AMR][1000 genomes]
rs2967446	0.82[AMR][1000 genomes]
rs2967453	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2967528	0.81[AMR][1000 genomes]
rs2967530	0.81[AMR][1000 genomes]
rs2967531	0.81[AMR][1000 genomes]
rs2967534	0.84[AMR][1000 genomes]
rs2967535	0.84[AMR][1000 genomes]
rs2967537	0.81[AMR][1000 genomes]
rs2967539	0.82[AMR][1000 genomes]
rs2967540	0.82[AMR][1000 genomes]
rs3107235	0.84[AMR][1000 genomes]
rs3107236	0.84[AMR][1000 genomes]
rs3108598	0.80[ASN][1000 genomes]
rs3111553	0.84[AMR][1000 genomes]
rs34550124	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34664029	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34830781	0.87[AMR][1000 genomes]
rs35408779	0.87[AMR][1000 genomes]
rs62113910	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62113945	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8104181	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv911648	chr19:36914171-37047472	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36999200-37014400	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:36999200-37018000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:36999600-37002600	Weak transcription	HSMM	muscle
4	chr19:36999800-37017400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:37000000-37002800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr19:37000000-37011600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:37000000-37016400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:37000000-37017000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:37000000-37017800	ZNF genes & repeats	Liver	Liver
10	chr19:37000400-37002600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr19:37001000-37002600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr19:37001000-37018000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr19:37001200-37002800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
14	chr19:37001400-37002600	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr19:37001400-37010400	ZNF genes & repeats	Fetal Brain Male	brain
16	chr19:37001400-37010600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:37001400-37017200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:37001600-37003200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr19:37001600-37003800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr19:37001600-37016400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr19:37001600-37018200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:37001800-37004600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr19:37002200-37002600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr19:37002400-37005200	Weak transcription	Fetal Thymus	thymus
25	chr19:37002400-37009400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr19:37002400-37010400	ZNF genes & repeats	Brain Hippocampus Middle	brain
27	chr19:37002400-37014000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:37002400-37014200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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