Variant report

Variant	rs11670943
Chromosome Location	chr19:52551959-52551960
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr19:52551918-52552271	GM12878	blood:	n/a	n/a
2	STAT5A	chr19:52551516-52552828	GM12878	blood:	n/a	chr19:52551560-52551569 chr19:52551559-52551568 chr19:52551835-52551847
3	POLR2A	chr19:52551783-52552663	HepG2	liver:	n/a	n/a
4	BCL3	chr19:52551838-52552503	GM12878	blood:	n/a	chr19:52552272-52552279 chr19:52552187-52552200
5	MXI1	chr19:52551198-52553036	IMR90	lung:	n/a	n/a
6	POLR2A	chr19:52551536-52552768	K562	blood:	n/a	n/a
7	TEAD4	chr19:52551839-52552382	H1-hESC	embryonic stem cell:	n/a	n/a
8	TRIM28	chr19:52551527-52552563	K562	blood:	n/a	n/a
9	POLR2A	chr19:52551788-52552494	H1-hESC	embryonic stem cell:	n/a	n/a
10	YY1	chr19:52551759-52552941	GM12878	blood:	n/a	chr19:52552158-52552166 chr19:52552155-52552165 chr19:52552156-52552164 chr19:52552637-52552645 chr19:52552636-52552646 chr19:52551832-52551841 chr19:52552636-52552658 chr19:52552155-52552177 chr19:52552261-52552271
11	ARID3A	chr19:52551838-52552062	K562	blood:	n/a	n/a
12	MAX	chr19:52551707-52552778	MCF-7	breast:	n/a	chr19:52552306-52552315 chr19:52552070-52552079 chr19:52551833-52551843
13	BCL3	chr19:52551823-52552736	A549	lung:	n/a	chr19:52552272-52552279 chr19:52552187-52552200
14	KAP1	chr19:52551959-52552752	HEK293	kidney:	n/a	n/a
15	MAX	chr19:52551549-52552406	K562	blood:	n/a	chr19:52552306-52552315 chr19:52552070-52552079 chr19:52551833-52551843
16	TAF1	chr19:52551841-52552517	GM12878	blood:	n/a	n/a
17	POLR2A	chr19:52551537-52552755	K562	blood:	n/a	n/a
18	MYC	chr19:52551871-52551974	MCF-7	breast:	n/a	n/a
19	RFX5	chr19:52551920-52552055	GM12878	blood:	n/a	n/a
20	MAX	chr19:52551779-52552186	K562	blood:	n/a	chr19:52552070-52552079 chr19:52551833-52551843
21	POLR2A	chr19:52551242-52552839	H1-neurons	neurons:	n/a	n/a
22	ZC3H11A	chr19:52551907-52552783	K562	blood:	n/a	n/a
23	YY1	chr19:52551838-52552831	H1-hESC	embryonic stem cell:	n/a	chr19:52552158-52552166 chr19:52552155-52552165 chr19:52552156-52552164 chr19:52552637-52552645 chr19:52552636-52552646 chr19:52552636-52552658 chr19:52552155-52552177 chr19:52552261-52552271
24	CBX3	chr19:52551737-52552321	K562	blood:	n/a	n/a
25	MAX	chr19:52551836-52552365	ECC-1	luminal epithelium:	n/a	chr19:52552306-52552315 chr19:52552070-52552079
26	PML	chr19:52551804-52552415	K562	blood:	n/a	n/a
27	CREB1	chr19:52551640-52552764	GM12878	blood:	n/a	chr19:52552455-52552468
28	MAZ	chr19:52551450-52552642	K562	blood:	n/a	chr19:52552306-52552315 chr19:52552070-52552079 chr19:52551833-52551843
29	MAX	chr19:52551577-52552606	K562	blood:	n/a	chr19:52552306-52552315 chr19:52552070-52552079 chr19:52551833-52551843
30	POLR2A	chr19:52551848-52552299	MCF-7	breast:	n/a	n/a
31	YY1	chr19:52551764-52553049	SK-N-SH_RA	brain:	n/a	chr19:52552158-52552166 chr19:52552155-52552165 chr19:52552156-52552164 chr19:52552637-52552645 chr19:52552636-52552646 chr19:52551832-52551841 chr19:52552636-52552658 chr19:52552155-52552177 chr19:52552261-52552271
32	POLR2A	chr19:52551821-52552515	H1-hESC	embryonic stem cell:	n/a	n/a
33	GABPA	chr19:52551829-52552299	K562	blood:	n/a	n/a
34	WRNIP1	chr19:52551447-52552836	GM12878	blood:	n/a	n/a
35	POLR2A	chr19:52551708-52552866	SK-N-SH	brain:	n/a	n/a
36	MAX	chr19:52551765-52552384	SK-N-SH	brain:	n/a	chr19:52552306-52552315 chr19:52552070-52552079 chr19:52551833-52551843
37	ZNF384	chr19:52551943-52552424	K562	blood:	n/a	n/a
38	ELK1	chr19:52551940-52552205	K562	blood:	n/a	n/a
39	POLR2A	chr19:52551605-52552823	K562	blood:	n/a	n/a
40	POLR2A	chr19:52551912-52552627	HUVEC	blood vessel:	n/a	n/a
41	POLR2A	chr19:52551822-52552437	GM12892	blood:	n/a	n/a
42	CREB1	chr19:52551738-52552835	HepG2	liver:	n/a	chr19:52552455-52552468
43	TAF1	chr19:52551834-52552852	H1-neurons	neurons:	n/a	n/a
44	GABPA	chr19:52551804-52552458	A549	lung:	n/a	n/a
45	TAF1	chr19:52551856-52552703	SK-N-SH	brain:	n/a	n/a
46	BCL3	chr19:52551837-52552708	A549	lung:	n/a	chr19:52552272-52552279 chr19:52552187-52552200
47	UBTF	chr19:52551904-52552671	K562	blood:	n/a	n/a
48	EP300	chr19:52551629-52552333	GM12878	blood:	n/a	chr19:52552125-52552134
49	EGR1	chr19:52551721-52552317	H1-hESC	embryonic stem cell:	n/a	chr19:52551830-52551843 chr19:52551830-52551843 chr19:52551825-52551847 chr19:52551829-52551843 chr19:52551830-52551843 chr19:52551843-52551857 chr19:52551831-52551842 chr19:52551834-52551844 chr19:52551830-52551843 chr19:52551830-52551840 chr19:52551831-52551840 chr19:52551829-52551844
50	POLR2A	chr19:52551718-52552479	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:52527946..52533480-chr19:52550519..52554398,10	K562	blood:
2	chr19:52530218..52533559-chr19:52550553..52554398,9	K562	blood:
3	chr19:52551561..52553801-chr19:52643165..52644706,2	K562	blood:
4	chr19:52551202..52553746-chr19:52596231..52599092,3	K562	blood:
5	chr1:147806539..147807198-chr19:52551536..52552465,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF613-7	chr19:52551253-52553075	NONHSAT067510

Variant related genes	Relation type
ZNF432	TF binding region
ENSG00000197608	Chromatin interaction
ENSG00000256087	Chromatin interaction
ENSG00000142556	Chromatin interaction
ENSG00000202408	Chromatin interaction
ENSG00000204611	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1147	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758767	chr19:51991896-52604625	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	578 gene(s)	inside rSNPs	diseases
2	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
3	esv34938	chr19:52227916-52630935	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv1061029	chr19:52249900-52614747	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2757699	chr19:52259571-52604625	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	esv2751797	chr19:52259588-52604625	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1061100	chr19:52259839-52617390	Strong transcription Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv1060519	chr19:52270087-52628611	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv579998	chr19:52270942-52613105	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1056146	chr19:52271018-52617390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv1057485	chr19:52271309-52614747	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv870043	chr19:52271348-52619860	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv534202	chr19:52272356-52627403	Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv1059263	chr19:52273257-52607771	ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv1057290	chr19:52273257-52614747	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
16	nsv1064732	chr19:52273257-52617390	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv1059924	chr19:52273257-52628611	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv1057217	chr19:52283498-52617132	Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
19	nsv1062154	chr19:52283498-52617390	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1060988	chr19:52283498-52621644	Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
21	nsv1058292	chr19:52284671-52614747	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
22	nsv1063940	chr19:52284671-52617390	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
23	esv2751798	chr19:52285788-52604625	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
24	esv2751799	chr19:52285788-52604625	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
25	esv2751800	chr19:52285788-52604625	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
26	esv2751801	chr19:52285788-52604625	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
27	esv34502	chr19:52285829-52604625	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
28	nsv458734	chr19:52287452-52601399	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
29	nsv579999	chr19:52287452-52601399	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
30	nsv458735	chr19:52287452-52607765	Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
31	nsv458736	chr19:52287452-52607765	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
32	nsv580000	chr19:52287452-52607765	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
33	nsv1055523	chr19:52288763-52578312	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
34	nsv544055	chr19:52288763-52578312	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
35	nsv916346	chr19:52288798-52578302	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
36	nsv1059596	chr19:52295063-52553755	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
37	nsv544057	chr19:52295063-52553755	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
38	nsv1064316	chr19:52295063-52593062	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
39	nsv544058	chr19:52295063-52593062	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
40	nsv580002	chr19:52304146-52617298	Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
41	nsv458737	chr19:52306547-52601399	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
42	nsv580003	chr19:52306547-52601399	Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
43	nsv458738	chr19:52306547-52621644	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
44	nsv580004	chr19:52306547-52621644	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
45	nsv531306	chr19:52327602-52616696	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
46	nsv534124	chr19:52368797-52616696	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
47	nsv833872	chr19:52431787-52619024	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
48	nsv1059138	chr19:52467700-52593062	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
49	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
50	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52550600-52553000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr19:52550800-52553200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:52550800-52553200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:52550800-52553600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:52551000-52552200	Active TSS	HUVEC	blood vessel
6	chr19:52551000-52552600	Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr19:52551000-52552800	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr19:52551000-52552800	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr19:52551000-52552800	Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr19:52551000-52552800	Active TSS	NHDF-Ad	bronchial
11	chr19:52551000-52553000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr19:52551000-52553000	Active TSS	H1 Cell Line	embryonic stem cell
13	chr19:52551000-52553000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:52551000-52553000	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr19:52551000-52553000	Active TSS	Muscle Satellite Cultured Cells	--
16	chr19:52551000-52553000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr19:52551000-52553000	Active TSS	NHLF	lung
18	chr19:52551000-52553200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr19:52551000-52553200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr19:52551000-52553200	Active TSS	Fetal Brain Female	brain
21	chr19:52551000-52553200	Active TSS	Fetal Kidney	kidney
22	chr19:52551000-52553200	Active TSS	Stomach Smooth Muscle	stomach
23	chr19:52551000-52553400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr19:52551000-52553400	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr19:52551000-52553400	Active TSS	HMEC	breast
26	chr19:52551000-52553800	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr19:52551200-52552600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr19:52551200-52552600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr19:52551200-52552600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:52551200-52552600	Active TSS	NH-A	brain
31	chr19:52551200-52552800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr19:52551200-52552800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr19:52551200-52552800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr19:52551200-52552800	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr19:52551200-52552800	Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr19:52551200-52552800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr19:52551200-52552800	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr19:52551200-52552800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr19:52551200-52552800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:52551200-52552800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr19:52551200-52552800	Active TSS	Colon Smooth Muscle	Colon
42	chr19:52551200-52552800	Active TSS	Duodenum Mucosa	Duodenum
43	chr19:52551200-52552800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr19:52551200-52552800	Active TSS	Fetal Intestine Small	intestine
45	chr19:52551200-52552800	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr19:52551200-52552800	Active TSS	Fetal Lung	lung
47	chr19:52551200-52552800	Active TSS	Fetal Stomach	stomach
48	chr19:52551200-52552800	Active TSS	Rectal Smooth Muscle	rectum
49	chr19:52551200-52552800	Active TSS	A549	lung
50	chr19:52551200-52553000	Active TSS	H9 Cell Line	embryonic stem cell

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