The 2.0 version of rSNPBase

Variant report

Variant rs11672142
Chromosome Location chr19:21243157-21243158
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:21204400-21264800 Weak transcription Right Ventricle heart
2 chr19:21223000-21244200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr19:21227800-21247200 Weak transcription HepG2 liver
4 chr19:21230600-21248400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr19:21231800-21244600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr19:21232200-21243600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr19:21235400-21243200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
8 chr19:21236000-21247000 Weak transcription Pancreas Pancrea
9 chr19:21236400-21264800 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr19:21238400-21248400 Weak transcription Psoas Muscle Psoas
11 chr19:21239000-21243200 Weak transcription K562 blood
12 chr19:21239200-21245400 Weak transcription Esophagus oesophagus
13 chr19:21239200-21246800 Weak transcription Aorta Aorta
14 chr19:21239800-21249400 Weak transcription Hela-S3 cervix
15 chr19:21240000-21247400 Weak transcription Brain Substantia Nigra brain
16 chr19:21240000-21264800 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr19:21240000-21264800 Weak transcription Brain Inferior Temporal Lobe brain
18 chr19:21240200-21245400 Weak transcription Ovary ovary
19 chr19:21240200-21246200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr19:21240200-21247600 Weak transcription Brain Cingulate Gyrus brain
21 chr19:21240200-21264800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr19:21240800-21243800 Weak transcription H1 Cell Line embryonic stem cell
23 chr19:21240800-21246800 Weak transcription Brain Hippocampus Middle brain
24 chr19:21240800-21250000 Weak transcription Fetal Thymus thymus
25 chr19:21240800-21256800 Weak transcription Placenta Amnion Placenta Amnion
26 chr19:21241000-21245400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr19:21241000-21245400 Weak transcription Brain Germinal Matrix brain
28 chr19:21241000-21246800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr19:21241000-21246800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr19:21241000-21246800 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr19:21241000-21246800 Weak transcription Stomach Smooth Muscle stomach
32 chr19:21241000-21247000 Weak transcription Osteobl bone
33 chr19:21241000-21248200 Weak transcription Brain Angular Gyrus brain
34 chr19:21241000-21248200 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr19:21241000-21248200 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr19:21241000-21264800 Weak transcription Gastric stomach
37 chr19:21241200-21245200 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr19:21241200-21245200 Weak transcription Fetal Stomach stomach
39 chr19:21241200-21245400 Weak transcription Left Ventricle heart
40 chr19:21241200-21245400 Weak transcription Thymus Thymus
41 chr19:21241200-21245600 Weak transcription Fetal Muscle Leg muscle
42 chr19:21241200-21246000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr19:21241200-21247200 Weak transcription Adipose Nuclei Adipose
44 chr19:21241200-21248000 Weak transcription Fetal Muscle Trunk muscle
45 chr19:21241200-21251000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr19:21241200-21251000 Weak transcription NH-A brain
47 chr19:21241200-21264800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr19:21241400-21246800 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr19:21241400-21249600 Weak transcription Placenta Placenta
50 chr19:21241400-21251000 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015