Variant report

Variant	rs11677671
Chromosome Location	chr2:37671605-37671606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10187899	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11675003	1.00[AMR][1000 genomes]
rs11675007	1.00[AMR][1000 genomes]
rs11677182	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11677544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11694425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12472505	1.00[AFR][1000 genomes]
rs17020628	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17020741	1.00[EUR][1000 genomes]
rs4390746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4670197	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4670202	1.00[AMR][1000 genomes]
rs4670706	1.00[AMR][1000 genomes]
rs4670707	1.00[AMR][1000 genomes]
rs4670710	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4670712	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4670715	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4670716	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4670718	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56010298	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56049744	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58023647	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58400888	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58486146	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60243594	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60383893	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73924652	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73924654	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs950296	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37669200-37675200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:37670000-37678400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links