Variant report

Variant	rs11682872
Chromosome Location	chr2:56097711-56097712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10173401	0.88[ASN][1000 genomes]
rs10186499	0.88[ASN][1000 genomes]
rs11680015	0.89[ASN][1000 genomes]
rs11688992	0.89[EUR][1000 genomes]
rs11691041	0.89[EUR][1000 genomes]
rs11691472	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11693381	0.89[EUR][1000 genomes]
rs11695502	0.89[ASN][1000 genomes]
rs13403273	0.88[ASN][1000 genomes]
rs13404859	0.88[ASN][1000 genomes]
rs17047302	0.96[EUR][1000 genomes]
rs2163238	0.93[EUR][1000 genomes]
rs28789713	0.87[EUR][1000 genomes]
rs4260283	0.88[ASN][1000 genomes]
rs4671261	0.89[EUR][1000 genomes]
rs55867135	0.92[ASN][1000 genomes]
rs55916998	0.93[EUR][1000 genomes]
rs55987978	0.94[EUR][1000 genomes]
rs56102096	0.93[EUR][1000 genomes]
rs56122343	1.00[ASN][1000 genomes]
rs57233927	0.93[EUR][1000 genomes]
rs59504093	0.93[EUR][1000 genomes]
rs59870589	1.00[ASN][1000 genomes]
rs59877895	0.88[ASN][1000 genomes]
rs60693760	0.93[EUR][1000 genomes]
rs6705051	0.87[EUR][1000 genomes]
rs6719384	0.96[EUR][1000 genomes]
rs6735306	0.96[EUR][1000 genomes]
rs72805673	0.89[EUR][1000 genomes]
rs72805674	0.89[EUR][1000 genomes]
rs72805675	0.89[EUR][1000 genomes]
rs72807714	0.93[EUR][1000 genomes]
rs72807727	0.93[EUR][1000 genomes]
rs72807728	0.93[EUR][1000 genomes]
rs72807744	0.93[EUR][1000 genomes]
rs7563085	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581441	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7582381	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56089200-56112200	Weak transcription	Pancreas	Pancrea
2	chr2:56089800-56098000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:56090000-56107600	Weak transcription	Fetal Stomach	stomach
4	chr2:56090200-56107400	Weak transcription	Fetal Lung	lung
5	chr2:56091200-56102600	Weak transcription	Hela-S3	cervix
6	chr2:56092000-56099200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:56092400-56100000	Genic enhancers	Osteobl	bone
8	chr2:56092400-56111600	Genic enhancers	HUVEC	blood vessel
9	chr2:56092600-56102600	Strong transcription	HSMM	muscle
10	chr2:56092800-56107800	Weak transcription	Brain Anterior Caudate	brain
11	chr2:56092800-56112400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:56092800-56114400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:56093000-56098600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:56093800-56109000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:56094800-56116200	Weak transcription	Spleen	Spleen
16	chr2:56095000-56102600	Weak transcription	A549	lung
17	chr2:56095600-56109600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:56096000-56106000	Weak transcription	Ovary	ovary
19	chr2:56096600-56097800	Genic enhancers	NHEK	skin
20	chr2:56097000-56098000	Strong transcription	Lung	lung
21	chr2:56097000-56098200	Enhancers	NHDF-Ad	bronchial
22	chr2:56097000-56099000	Strong transcription	HSMMtube	muscle
23	chr2:56097000-56108800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:56097400-56098200	Strong transcription	HMEC	breast
25	chr2:56097400-56098600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:56097400-56098600	Weak transcription	Right Atrium	heart
27	chr2:56097400-56098600	Strong transcription	NH-A	brain
28	chr2:56097400-56099000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:56097400-56099000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:56097400-56102000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:56097400-56102400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr2:56097600-56098000	Strong transcription	Placenta	Placenta
33	chr2:56097600-56098800	Strong transcription	Aorta	Aorta
34	chr2:56097600-56099000	Strong transcription	NHLF	lung
35	chr2:56097600-56099200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:56097600-56102800	Strong transcription	Adipose Nuclei	Adipose

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