Variant report

Variant	rs11683872
Chromosome Location	chr2:37520079-37520080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37515749..37518986-chr2:37519736..37522711,3	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10176949	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10177176	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10184179	0.83[EUR][1000 genomes]
rs10190959	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10209937	0.80[EUR][1000 genomes]
rs11124569	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11124574	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1158218	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1158219	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11679617	0.87[EUR][1000 genomes]
rs11680401	0.83[EUR][1000 genomes]
rs11682607	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11685805	0.87[EUR][1000 genomes]
rs11689794	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11693917	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11893943	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12616151	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12618410	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12712532	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13015451	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13030789	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13419498	0.80[ASN][1000 genomes]
rs17020479	0.83[AFR][1000 genomes]
rs2041836	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2300893	0.89[EUR][1000 genomes]
rs2372993	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2888434	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3213745	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34819784	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3755195	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3770759	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4998429	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6734118	0.80[ASN][1000 genomes]
rs74177070	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7563610	0.83[EUR][1000 genomes]
rs7568510	0.89[AFR][1000 genomes]
rs7570547	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7584565	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7589296	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs876462	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9309004	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410716	chr2:37519728-37520086	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs11683872	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs11683872	CEBPZ	cis	Esophagus Muscularis	GTEx
rs11683872	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs11683872	RP11-423P10.2	cis	Esophagus Muscularis	GTEx
rs11683872	RP11-423P10.2	cis	Esophagus Mucosa	GTEx
rs11683872	CEBPZ	cis	Thyroid	GTEx
rs11683872	CEBPZ	cis	lung	GTEx
rs11683872	CEBPZ	cis	Esophagus Mucosa	GTEx
rs11683872	PRKD3	cis	lung	GTEx
rs11683872	CEBPZ	cis	Nerve Tibial	GTEx

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
2	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
3	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:37479400-37520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
9	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
10	chr2:37487600-37521200	Weak transcription	Brain Angular Gyrus	brain
11	chr2:37490600-37521000	Strong transcription	Dnd41	blood
12	chr2:37499200-37520800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:37499200-37521400	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:37499200-37522200	Weak transcription	Spleen	Spleen
15	chr2:37499400-37522800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:37499400-37528600	Weak transcription	Brain Anterior Caudate	brain
17	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
19	chr2:37500200-37530200	Weak transcription	Gastric	stomach
20	chr2:37500400-37520400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
22	chr2:37502200-37528200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:37502200-37528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:37502600-37521600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:37502600-37524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:37502600-37528600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
28	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
29	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:37502800-37528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr2:37502800-37528800	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:37502800-37533800	Weak transcription	Lung	lung
33	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
34	chr2:37505000-37521000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr2:37505600-37520400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:37509600-37528600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr2:37510200-37526600	Weak transcription	K562	blood
40	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
41	chr2:37510800-37532200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr2:37511000-37533600	Weak transcription	Left Ventricle	heart
43	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:37511200-37530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr2:37511200-37534600	Weak transcription	HSMMtube	muscle
46	chr2:37511600-37520200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr2:37511800-37528600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:37512400-37520400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:37512600-37520400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr2:37512600-37521400	Strong transcription	Primary B cells from peripheral blood	blood

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