Variant report

Variant	rs11684093
Chromosome Location	chr2:63901261-63901262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11125981	0.89[ASN][1000 genomes]
rs11684973	0.89[ASN][1000 genomes]
rs13003009	0.87[ASN][1000 genomes]
rs13025357	0.87[ASN][1000 genomes]
rs1446568	0.83[ASN][1000 genomes]
rs2166496	0.89[ASN][1000 genomes]
rs2166498	0.83[ASN][1000 genomes]
rs33977056	0.87[ASN][1000 genomes]
rs34763417	0.87[ASN][1000 genomes]
rs67037366	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6710451	0.87[ASN][1000 genomes]
rs67257875	0.83[ASN][1000 genomes]
rs67356044	0.87[ASN][1000 genomes]
rs6751759	0.89[AFR][1000 genomes]
rs67696856	0.87[ASN][1000 genomes]
rs67752811	0.83[ASN][1000 genomes]
rs7591566	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63891800-63903400	Weak transcription	Aorta	Aorta
2	chr2:63896400-63903400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:63896400-63907200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:63896400-63911400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:63900400-63901400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:63900400-63903200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:63900400-63904000	Enhancers	Adipose Nuclei	Adipose
8	chr2:63900600-63901600	Enhancers	HepG2	liver
9	chr2:63901000-63907000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:63901200-63901400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:63901200-63901600	Enhancers	Liver	Liver
12	chr2:63901200-63902600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:63901200-63903400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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