Variant report

Variant	rs11685279
Chromosome Location	chr2:181934680-181934681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181905658..181907183-chr2:181933953..181935733,2	K562	blood:
2	chr2:181933363..181935246-chr2:181935494..181937024,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10183291	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes]
rs10194801	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198925	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10207300	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes]
rs10209672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10432490	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10803945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930951	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11689802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893940	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11902305	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12475075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12477135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12613470	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12614444	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13385287	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13410612	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2030242	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34865829	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4261681	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4286243	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4414647	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4439925	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508560	0.84[CEU][hapmap]
rs4541221	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4574074	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4638755	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4667036	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4667055	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73041032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603027	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs873256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181904400-181945400	Weak transcription	Left Ventricle	heart
2	chr2:181911800-181940400	Weak transcription	Primary T cells from cord blood	blood
3	chr2:181912400-181941400	Weak transcription	Esophagus	oesophagus
4	chr2:181913800-181938400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:181917600-181936800	Weak transcription	NHLF	lung
6	chr2:181917600-181937600	Weak transcription	Fetal Thymus	thymus
7	chr2:181917800-181935600	Weak transcription	Liver	Liver
8	chr2:181918000-181938200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:181920800-181949800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:181922000-181942400	Weak transcription	Fetal Intestine Large	intestine
11	chr2:181922200-181937000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:181922800-181938200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:181923400-181936400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:181923600-181935600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:181924000-181937200	Weak transcription	HSMMtube	muscle
16	chr2:181925000-181934800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:181925400-181934800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:181926200-181939600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr2:181928600-181942200	Weak transcription	Dnd41	blood
20	chr2:181928600-181943000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:181928800-181936800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:181929000-181937200	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:181929000-181937400	Weak transcription	Brain Angular Gyrus	brain
24	chr2:181929000-181940400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:181929000-181942200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr2:181929200-181936200	Weak transcription	Fetal Brain Male	brain
27	chr2:181930000-181934800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:181930600-181938800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:181930800-181942200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr2:181931400-181934800	Weak transcription	Fetal Intestine Small	intestine
31	chr2:181931400-181935000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:181931800-181934800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr2:181932000-181940600	Weak transcription	Primary B cells from cord blood	blood
34	chr2:181932200-181942600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:181932600-181938800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:181933600-181935600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:181934000-181935200	Enhancers	NHDF-Ad	bronchial
38	chr2:181934000-181935400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:181934200-181935000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr2:181934200-181935000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr2:181934200-181935000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:181934200-181935000	Enhancers	Small Intestine	intestine
43	chr2:181934200-181935600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:181934200-181935600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:181934200-181935600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:181934200-181935600	Enhancers	Primary hematopoietic stem cells	blood
47	chr2:181934200-181935600	Enhancers	Fetal Heart	heart
48	chr2:181934200-181935600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr2:181934200-181935600	Enhancers	HMEC	breast
50	chr2:181934200-181935800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links