Variant report

Variant	rs11685356
Chromosome Location	chr2:21197159-21197160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10188503	0.82[AFR][1000 genomes]
rs10207315	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713554	0.81[YRI][hapmap]
rs1317821	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392272	0.80[AFR][1000 genomes]
rs1469513	0.80[ASW][hapmap];0.88[YRI][hapmap]
rs693	0.80[ASW][hapmap];0.91[LWK][hapmap];0.94[YRI][hapmap]
rs952275	0.80[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11685356	C2orf43	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21195000-21201000	Enhancers	Stomach Smooth Muscle	stomach
2	chr2:21195200-21199200	Weak transcription	Lung	lung
3	chr2:21195200-21199400	Weak transcription	Gastric	stomach
4	chr2:21195600-21200600	Weak transcription	Fetal Kidney	kidney
5	chr2:21196800-21198800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:21196800-21199000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:21196800-21199400	Weak transcription	Fetal Stomach	stomach
8	chr2:21197000-21197400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:21197000-21199000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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