Variant report

Variant	rs11691041
Chromosome Location	chr2:56055139-56055140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11678312	0.81[EUR][1000 genomes]
rs11682872	0.89[EUR][1000 genomes]
rs11688992	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11691472	0.89[EUR][1000 genomes]
rs11693381	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367229	0.81[EUR][1000 genomes]
rs17047302	0.93[EUR][1000 genomes]
rs17369365	0.81[EUR][1000 genomes]
rs2163238	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28789713	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671261	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55916998	0.96[EUR][1000 genomes]
rs55987978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56102096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57233927	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59504093	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60693760	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705051	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719384	0.93[EUR][1000 genomes]
rs6735306	0.93[EUR][1000 genomes]
rs72797607	0.81[EUR][1000 genomes]
rs72797613	0.81[EUR][1000 genomes]
rs72805666	0.81[EUR][1000 genomes]
rs72805668	0.81[EUR][1000 genomes]
rs72805673	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72805674	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72805675	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807714	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807727	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807728	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807744	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563085	0.89[EUR][1000 genomes]
rs7581441	0.89[EUR][1000 genomes]
rs7582381	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56054000-56055200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:56054400-56055200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:56054400-56055200	Enhancers	Hela-S3	cervix
4	chr2:56054400-56055200	Enhancers	HMEC	breast
5	chr2:56054400-56055200	Enhancers	NHEK	skin
6	chr2:56054400-56055400	Enhancers	Osteobl	bone
7	chr2:56054400-56055600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:56054400-56055600	Enhancers	A549	lung
9	chr2:56054600-56055200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:56054800-56055200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:56054800-56055400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:56055000-56066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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