Variant report

Variant	rs11692072
Chromosome Location	chr2:181902462-181902463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:181901341..181903920-chr2:181904658..181907340,2	K562	blood:
2	chr2:181890931..181892991-chr2:181900599..181903348,2	K562	blood:
3	chr2:181889030..181891669-chr2:181901618..181903708,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10171108	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10171998	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10187842	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10930948	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10930950	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621277	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12989967	0.85[ASN][1000 genomes]
rs13004683	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13004750	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13019038	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1829365	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4346343	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4366861	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4510177	0.80[EUR][1000 genomes]
rs4595925	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4667005	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4667008	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4990275	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6433878	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6433879	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6433883	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6704750	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6706565	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6731268	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6735373	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6743720	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6744130	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6745190	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7371639	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7559803	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9808318	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181895000-181904000	Weak transcription	Left Ventricle	heart
2	chr2:181900600-181903400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:181900600-181904400	Enhancers	NHLF	lung
4	chr2:181900800-181904200	Enhancers	Osteobl	bone
5	chr2:181901000-181903200	Enhancers	HMEC	breast
6	chr2:181901000-181903400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:181901000-181903600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:181901200-181902800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:181901200-181902800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr2:181901200-181903200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:181901200-181903400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:181901200-181903600	Enhancers	NHEK	skin
13	chr2:181901200-181903800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:181901200-181903800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:181901200-181904400	Enhancers	NHDF-Ad	bronchial
16	chr2:181901200-181912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:181901400-181903800	Enhancers	NH-A	brain
18	chr2:181901400-181906400	Weak transcription	Psoas Muscle	Psoas
19	chr2:181901400-181910000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:181901600-181902800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:181901600-181902800	Enhancers	HUVEC	blood vessel
22	chr2:181901600-181911200	Weak transcription	GM12878-XiMat	blood
23	chr2:181902000-181903000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:181902000-181903200	Weak transcription	A549	lung
25	chr2:181902200-181926400	Weak transcription	HSMM	muscle
26	chr2:181902400-181902800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:181902400-181903000	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links